Author

P. Shih

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 3 Microbiology· 2 Biochemistry· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Organism:bacteria (other)· 2 Organism:plant (other)· 2 Approach:statistical model· 2 Organism:Arabidopsis· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1

Frequent Co-Authors

K. Markel· 2 shared A. Bhatt· 1 shared A. Deutschbauer· 1 shared A. E. Cowan· 1 shared A. Eudes· 1 shared A. I. Flamholz· 1 shared A. Mukhopadhyay· 1 shared A. Pearson· 1 shared

Activity by Year

2018-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersPlant Biology

K. Markel

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls

K. Markel, V. Novak, B. Bowen, Y. Tian, Y.-C. Chen, S. Sirirungruang, A. Zhou, K. Louie, T. Northen, A. Eudes, H. Scheller, P. Shih

This study investigates how Cynipid wasps alter plant metabolism and cell wall structure to form galls, revealing coordinated lignin and xylan deposition in gall vasculature.

Plant Physiology · Apr 30, 2024Peer-reviewedPlant Biology

Expression of a mammalian RNA demethylase increases flower number and floral stem branching in Arabidopsis thaliana

K. Markel, L. M. Waldburger, P. Shih

bioRxiv · Feb 15, 2024Plant Biology

A map of the rubisco biochemical landscape

N. Prywes, N. R. Phillips, L. M. Oltrogge, S. Lindner, Y.-C. Tsai, B. de Pins, A. E. Cowan, L. J. Taylor-Kearney, H. A. Chang, L. N. Hall, D. Bellieny-Rabelo, H. M. Nisonoff, R. F. Weissman, A. I. Flamholz, D. Ding, , D. F. Savage

The paper maps the sequence-to-function relationship of rubisco by assaying single amino acid mutants in E. coli, identifying conserved positions and mutations that improve CO2 affinity.

bioRxiv · Sep 27, 2023Biochemistry

Plant-based production of diverse human milk oligosaccharides

C. R. Barnum, B. Paviani, G. Couture, C. Masarweh, Y. Chen, Y.-P. Huang, D. A. Mills, C. B. Lebrilla, D. Barile, M. Yang, P. Shih

This study produces diverse human milk oligosaccharides (HMOs) in transgenic plants, demonstrating their potential for cost-effective and sustainable large-scale production compared to microbial methods.

bioRxiv · Sep 18, 2023 · PreprintPlant Biology

Functional analysis of the fatty acid and alcohol metabolism of Pseudomonas putida using RB-TnSeq

M. Thompson, M. Incha, A. Pearson, M. Schmidt, W. Sharpless, C. Eiben, P. Cruz-Morales, J. Blake-Hedges, Y. Liu, C. Adams, R. Haushalter, R. Krishna, P. Lichtner, L. M. Blank, A. Mukhopadhyay, , J. D. Keasling

This study uses RB-TnSeq to functionally analyze fatty acid and alcohol metabolism in Pseudomonas putida, identifying gene roles and catabolic pathways for isoprenol and isopentanol.

Applied and Environmental Microbiology · Oct 15, 2020Peer-reviewedMicrobiology

Hydrogen-based metabolism - An ancestral trait in lineages sibling to the Cyanobacteria

P. B. Matheus Carnevali, F. Schulz, C. J. Castelle, R. Kantor, P. Shih, I. Sharon, J. Santini, M. Olm, Y. Amano, B. C. Thomas, K. Anantharaman, D. Burstein, E. D. Becraft, R. Stepanauskas, T. Woyke, J. F. Banfield

This paper predicts the metabolisms of Margulisbacteria and Saganbacteria using genomic data and compares them to their phylogenetic neighbors, supporting the hypothesis that their ancestor used hydrogen metabolism and fermentation.

bioRxiv · May 25, 2018Microbiology