Author

Ping Liu

Nanyang Technological University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1 Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:differential expression· 2 Research Focus:host-pathogen & immune response· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1

Frequent Co-Authors

Andres MeritsiD· 1 shared Cuiling Lu· 1 shared Dahai LuoiD· 1 shared Haojie He· 1 shared Hongyan Guo· 1 shared Jianlin Jack ChengiD· 1 shared Jie QiaoiD· 1 shared Jie YaniD· 1 shared

Activity by Year

2015-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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1 shared paperMicrobiology

Andres MeritsORCID

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4 papers

Recent·Most cited

Distinct RNA engagements define genome import and replication elongation in alphaviruses

Yaw Bia Tan, Yongbo Luo, Ping Liu, Andres Merits, Dahai Luo

This paper presents a cryo-EM structure of the Chikungunya virus replication complex, revealing two distinct RNA-binding sites involved in genome import and replication elongation.

bioRxiv · Jul 3, 2026 · PreprintMicrobiology

TFBindFormer: A Cross-Attention Transformer for Transcription Factor-DNA Binding Prediction

Ping Liu, Lyuwei Wang, Shreya Basnet, Jianlin Jack Cheng

TFBindFormer improves TF-DNA binding prediction by integrating DNA and TF protein features using cross-attention, outperforming DNA-only models.

bioRxiv · Apr 15, 2026 · PreprintBioinformatics

Transcriptome Landscape of Human Oocytes and Granulosa Cells Throughout Folliculogenesis

Yaoyao Zhang, Zhiqiang Yan, Qingyuan Qin, Vicki Nisenblat, Yang Yu, Tianren Wang, Cuiling Lu, Ming Yang, Shuo Yang, Ying Yao, Xiaohui Zhu, Xi Xia, Yujiao Dang, Yixin Ren, Peng Yuan, , Liying Yan

This study profiles the transcriptomes of human oocytes and granulosa cells across folliculogenesis stages, identifying stage-specific genes, cell interactions, and differences from mouse oocytes.

bioRxiv · Mar 23, 2018 · PreprintCell Biology

Evolution of ecological dominance of yeast species in high-sugar environments

Kathryn M Williams, Ping Liu, Justin C Fay

This study examines the evolutionary timing and traits underlying Saccharomyces cerevisiae's dominance in high-sugar environments through co-culture experiments and growth rate assays.

bioRxiv · Jun 3, 2015Evolutionary Biology