Author

Rachel Trowbridge

Dana-Farber Cancer Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Genomics· 2

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 4 Organism:human· 4 Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Assay:ChIP-seq· 1

Frequent Co-Authors

Toni K. ChoueiriiD· 3 shared Aaron R. ThorneriD· 2 shared Amanda GarzaiD· 2 shared Eliezer M. Van AlleniD· 2 shared Erica Maria PimentaiD· 2 shared Erin E. ShannoniD· 2 shared Hunter SavignanoiD· 2 shared Jack T. HorstiD· 2 shared

Activity by Year

2025-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersGenomics

Toni K. ChoueiriORCID

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Author profile →

4 papers

Recent·Most cited

Single-cell epigenetic profiling reveals an interferon response-high program associated with BAP1 deficiency in kidney cancer

Sabrina Yvonne Camp, Meng Xiao He, Michael S. Cuoco, Amanda Garza, Simayijiang Xirenayi, Ziad Bakouny, Eddy Saad, Jad El Masri, Erica Maria Pimenta, Kevin Meli, Chris Labaki, Breanna M. Titchen, Yun Jee Kang, Jack T. Horst, Rachel Trowbridge, , Eliezer M. Van Allen

The paper identifies an IFN response-high epigenetic program linked to BAP1 deficiency in kidney cancer using single nucleus ATAC sequencing across multiple cohorts.

Science Advances · Feb 20, 2026Peer-reviewedCancer Biology

Integrated inference of cancer gene expression from cell-free plasma chromatin

Gunsagar Singh Gulati, Damien Vasseur, Rashad Nawfal, Shahabeddin Sotudian, Karl Semaan, Marc Eid, Ji-Heui Seo, Noa Phillips, John Canniff, Hunter Savignano, Surya B. Chhetri, Zhenjie Jin, Yukun Ou, Mohamed Amine Bani, Gwo‐Shu Mary Lee, , Matthew L. Freedman

APEX infers cancer gene expression from plasma cfChIP-seq data, outperforming existing methods and enabling subtype classification and biomarker identification.

bioRxiv · Feb 19, 2026 · PreprintGenomics

Detection and monitoring of translocation renal cell carcinoma via plasma cell-free epigenomic profiling

Simon Garinet, Karl Semaan, Jiao Li, Ananthan Sadagopan, John Canniff, Noa Phillips, Kelly S. Klega, Medha Panday, Hunter Savignano, Matthew P. Davidsohn, Kevin Lyons, Alessandro Medda, Prateek Khanna, Mingkee Achom, Prathyusha Konda, , Srinivas Raghavan Viswanathan

This paper detects and monitors translocation renal cell carcinoma (tRCC) using plasma cell-free epigenomic profiling, achieving high accuracy in distinguishing tRCC from other cancers and healthy controls.

Journal of Clinical Investigation · Feb 1, 2026Peer-reviewedGenomics

Evaluation of single-cell RNA profiling technologies using FFPE, fresh, and frozen ccRCC tumor specimens

Simayijiang Xirenayi, Sabrina Yvonne Camp, Amanda Garza, Yashika Rustagi, Erica Maria Pimenta, Erin E. Shannon, Anwesha Nag, Adam Betherman, Anthony N. Anselmo, Rachel Trowbridge, Aaron R. Thorner, Jihye Park, Kevin Bi, Eliezer M. Van Allen

The paper compares single-cell RNA profiling technologies using different sample types to assess their performance in tumor specimens.

bioRxiv · Nov 25, 2025 · PreprintCancer Biology