Author

Rakesh Pathak

Centre National de la Recherche Scientifique

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Cancer Biology· 1 Genetics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:ChIP-seq· 3 Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:human· 2 Organism:mouse· 2

Frequent Co-Authors

Priyanka SinghiD· 2 shared Abhishek Anand· 1 shared Adam David DurbiniD· 1 shared Alan EngelmaniD· 1 shared Alfonso Lavado· 1 shared Ali Rabi· 1 shared Alice Marchand· 1 shared Alisha KardianiD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Priyanka SinghORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Dominant Malignant Clones Leverage Lineage Restricted Epigenomic Programs to Drive Ependymoma Development

Alisha Kardian, Hua Sun, Siri Manasa Ippagunta, Nic Laboe, Srinidhi Varadharajan, Kwanha Yu, Hsiao‐Chi Chen, Erik Emanus, Tuyu Zheng, Riley M. Deneen, Jon P. Connelly, Yong-Dong Wang, Jiangshan Zhan, Hengxi Liu, Kimberley Lowe, , Stephen C. Mack

This study identifies specific developmental epigenomic states that enable ZFTA-RELA-driven ependymoma formation and reveals how these states shape tumor progression.

Nature · Mar 25, 2026Peer-reviewedCancer Biology

The role of LEDGF in transcription is exploited by HIV-1 to position integration

Rakesh Pathak, Caroline Esnault, Rajalingam Radhakrishnan, Parmit Kumar Singh, Hongen Zhang, Ryan Dale, Abhishek Anand, Gregory J. Bedwell, Alan Engelman, Ali Rabi, Sahand Hormoz, Priyanka Singh, Henry L. Levin

This study shows LEDGF is recruited to promoters by MLL1 and recruits RNA Pol II, facilitating HIV-1 integration across gene bodies.

bioRxiv · Jun 29, 2024 · PreprintGenomics

CTCF controls imprinted gene activity at the mouse Dlk1-Dio3 and Igf2- H19 domains by modulating allele-specific sub-TAD structure

David Llères, Benoît Moindrot, Rakesh Pathak, Vincent Piras, Mélody Matelot, Benoît Pignard, Alice Marchand, Mallory Poncelet, Aurélien Perrin, Virgile Tellier, Robert Feil, Daan Noordermeer

The paper investigates how CTCF modulates sub-TAD structure at imprinted domains in mice, affecting gene activity through allele-specific binding.

Genome biology · Dec 1, 2019Peer-reviewedMolecular Biology

Acetylation-Dependent Recruitment of the FACT Complex and Its Role in Regulating Pol II Occupancy Genome-Wide in Saccharomyces cerevisiae.

Rakesh Pathak, Priyanka Singh, Sudha Ananthakrishnan, Sarah Adamczyk, Olivia Schimmel, Chhabi K. Govind

This study investigates the role of FACT and Spt6 in transcription regulation in yeast by examining their recruitment and impact on Pol II occupancy.

Genetics · Apr 25, 2018Peer-reviewedGenetics