Author

Alienke van Pijkeren

University of GroningenORCID 0000-0001-6830-0606Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:proteomics· 3 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Research Focus:deconvolution· 1 Assay:metagenomics· 1 Research Focus:protein design· 1 Research Focus:protein structure prediction· 1 Approach:statistical model· 1

Frequent Co-Authors

Anna-Sophia EggeriD· 2 shared Marcel KwiatkowskiiD· 2 shared André GollowitzeriD· 1 shared Andreas KoeberleiD· 1 shared Apostolos MourtzinosiD· 1 shared Brian T. ChaitiD· 1 shared Elisabeth Zimmermann· 1 shared Hua Liang JiangiD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersSystems Biology

Anna-Sophia EggerORCID

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3 papers

Recent·Most cited

Targeted detection of endogenous LINE-1 proteins and ORF2p interactions

Mathias Ingemann Nielsen, Justina Clarinda Wolters, Omar G. Rosas Bringas, Hua Liang Jiang, Luciano H. Di Stefano, Mehrnoosh Oghbaie, Samira Hozeifi, Mats J. Nitert, Alienke van Pijkeren, Marieke Smit, Lars ter Morsche, Apostolos Mourtzinos, Vikram Deshpande, Martin S. Taylor, Brian T. Chait, John LaCava

This paper develops targeted mass spectrometry assays to detect and quantify endogenous ORF1p and ORF2p proteins, demonstrating sensitive and robust quantitation of ORF2p for the first time.

Mobile DNA · Feb 6, 2025Peer-reviewedMolecular Biology

Proteome coverage after simultaneous proteo-metabolome liquid-liquid extraction

Alienke van Pijkeren, Anna-Sophia Egger, Madlen Hotze, Elisabeth Zimmermann, Tobias Kipura, Julia Grander, André Gollowitzer, Andreas Koeberle, Rainer Bischoff, Kathrin Thedieck, Marcel Kwiatkowski

This study compares proteome coverage and extraction efficiency of different solubilization agents in proteo-metabolome analysis using SPM-LLE and direct cell lysis.

Journal of Proteome Research · Feb 10, 2023Peer-reviewedSystems Biology

Natural isotope correction improves analysis of protein modification dynamics

Jörn Dietze, Alienke van Pijkeren, Anna-Sophia Egger, Mathias Ziegler, Marcel Kwiatkowski, Ines Heiland

The paper introduces PICor, a tool for isotopologue correction in proteomics and metabolomics, demonstrating its importance for accurate analysis of protein modification dynamics.

Analytical and Bioanalytical Chemistry · Oct 27, 2021Peer-reviewedBioinformatics