Author

Qi Liu

Vanderbilt University Medical CenterORCID 0000-0002-0839-8039Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Qi Liu17 papers · Tongji University

Biology Disciplines

Click to filter author papers

Cancer Biology· 1 Cell Biology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Assay:DNA methylation· 1 Assay:fluorescence / live-cell microscopy· 1

Frequent Co-Authors

Alan J. SimmonsiD· 2 shared Harsimran KauriD· 2 shared Ken S. LauiD· 2 shared Nicholas O. MarkhamiD· 2 shared Abby L. GeisiD· 1 shared Amrita BanerjeeiD· 1 shared Annika Lisbeth WindoniD· 1 shared April Camilla RoslaniiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersCancer Biology

Alan J. SimmonsORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Spatial atlas highlights contribution of C. difficile in early-stage colorectal cancer

Nicholas O. Markham, Julia L. Drewes, Emily H. Green, William Ball, Hannah M. Lunnemann, Alan J. Simmons, Harsimran Kaur, Jessica Queen, Abby L. Geis, Maryam Pourmaleki, Bryan R. Helm, Erik P. Storrs, Marisol A Ramirez-Solano, Xiang Li, Zhicheng Ma, , Robert J. Coffey

The paper creates a spatial atlas of early-stage colorectal cancer tumors to identify bacterial niches and their impact on tumor transcriptomes, highlighting C. difficile's significant influence despite low abundance.

bioRxiv · Jun 20, 2026 · PreprintCancer Biology

Pathobiont-triggered induction of epithelial IDO1 drives regional susceptibility to Inflammatory Bowel Disease

Paige N Spencer, Jiawei Wang, Erin P. Smith, Luisella Spiga, Alan J. Simmons, Tae Woo Kim, William Kim, Monica E Brown, Yilin Yang, Harsimran Kaur, Yanwen Xu, Seungwoo Kang, Matthew D Helou, Mason A. Lee, Lin Zheng, , Ken S. Lau

The paper identifies a pathobiont-epithelial IDO1 pathway that drives region-specific susceptibility to inflammatory bowel disease in the ascending colon.

bioRxiv · Jan 4, 2025 · PreprintCell Biology

PAX3-FOXO1 coordinates enhancer architecture, eRNA transcription, andRNA polymerase pause release at select gene targets

Susu Zhang, Jing Wang, Qi Liu, William Hayes McDonald, Monica L. Bomber, Hillary M. Layden, Jacob D. Ellis, Scott C. Borinstein, Scott W. Hiebert, Kristy R. Stengel

This study uses a chemical-genetic approach to show that PAX3-FOXO1 regulates enhancer architecture, eRNA transcription, and RNA polymerase pause release at specific gene targets.

Molecular Cell · Nov 16, 2022Peer-reviewedMolecular Biology