Author

Birol Cabukusta

Leiden University Medical CenterORCID 0000-0002-1187-3048Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cell Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell signaling & trafficking· 2 Research Focus:cell type annotation· 2 Assay:proteomics· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:genetic perturbation / CRISPR· 1 Organism:human· 1

Frequent Co-Authors

Jacques NeefjesiD· 2 shared Martin A. GieraiD· 2 shared Peter A. van VeeleniD· 2 shared Roman I. KoningiD· 2 shared A van der Meulen - de de JongiD· 1 shared Alessandro Ori‬‬iD· 1 shared Andy Henrie· 1 shared Anna E. GeorgeiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersCell Biology

Jacques NeefjesORCID

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3 papers

Recent·Most cited

Cell BiologyCell ReportsPeer-reviewedJul 31, 2026

CRISPR activation screen uncovers MARCKSL1 as a gauge for extracellular vesicle secretion.

Yingjie Zhong, Anna E. George, Roman I. Koning…·Ilana Berlin

The paper identifies MARCKSL1 as a regulator of extracellular vesicle secretion pathways through a CRISPR activation screen and functional studies.

DOI 10.1016/j.celrep.2026.117744

humanproteomics

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Cell BiologybioRxivPreprintJan 27, 2026

VAPB and its binding partner AKAP11 promote lipid droplet degradation

Shalom Borst Pauwels, Menno Spits, Lennert Janssen…·Birol Cabukusta

This study identifies VAPB and AKAP11 as regulators of lipid droplet homeostasis by mediating neutral lipid degradation through membrane contact sites and PKA activity.

2 citations

experimental assaycell signaling & trafficking

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BioinformaticsAnalytical ChemistryPeer-reviewedJan 31, 2025

iSODA: A Comprehensive Tool for Integrative Omics Data Analysis in Single- and Multi-Omics Experiments

Damien Olivier‐Jimenez, Rico J. E. Derks, Oscar Harari…·Yassene Mohammed

iSODA is a web-based tool for analyzing single- and multi-omics data, offering visualization, normalization, and integration methods like MOFA and SNF.

10 citations

proteomicsmetabolomics

𝕏 PostBluesky