Author

Thomas A Prohaska

University of California San DiegoORCID 0000-0002-1406-692XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Genomics· 1 Immunology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:mouse· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Christopher K. GlassiD· 2 shared Adrien Tin-Kim-Wang· 1 shared Alexander Michael Leipold· 1 shared Alma ZerneckeiD· 1 shared Andrea Ninni· 1 shared Anna Rizakou· 1 shared Antoine‐Emmanuel SalibaiD· 1 shared Casey E. RomanoskiiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersImmunology

Christopher K. GlassORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

TREM2 drives accumulation of pro-scarring monocyte-derived macrophages in the infarcted myocardium

Giuseppe Rizzo, Marie Piollet, Tobias Krammer, Ecem T. Sakalli, Alexander Michael Leipold, Julius Gropper, Paul Alayrac, Adrien Tin-Kim-Wang, Manuel Gendre, Thomas A Prohaska, Paula-Anahi Arias-Loza, Ludovica Timperi, Anna Rizakou, Sourish Reddy Bandi, D. Schulz, , Clément Cochain

This study shows TREM2 drives pro-scarring macrophage accumulation in infarcted myocardium, leading to fibrosis and reduced cardiac repair.

bioRxiv · Aug 21, 2026 · PreprintImmunology

Systematic analysis of naturally occurring insertions and deletions that alter transcription factor spacing identifies tolerant and sensitive transcription factor pairs

Zeyang Shen, Rick Z. Li, Thomas A Prohaska, Marten A. Hoeksema, Nathan J. Spann, Jenhan Tao, Gregory J. Fonseca, Thomas Le, Lindsey K. Stolze, Mashito Sakai, Casey E. Romanoski, Christopher K. Glass

The paper systematically analyzes naturally occurring insertions and deletions (InDels) to assess their impact on transcription factor spacing and identifies tolerant and sensitive TF pairs.

eLife · Jan 20, 2022Peer-reviewedGenomics