Author

Frédéric Burdet

SIB Swiss Institute of BioinformaticsORCID 0000-0002-2923-827XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1 Microbiology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 4 Approach:statistical model· 4 Research Focus:gene regulatory network inference· 3 Research Focus:differential expression· 2 Organism:Drosophila· 2 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Astrid Melotti· 2 shared Hubert HilbiiD· 2 shared Marco PagniiD· 2 shared Mark R. IbbersoniD· 2 shared Nabil HannaiD· 2 shared Pierre CossoniD· 2 shared Thierry SoldatiiD· 2 shared Aaron R. JeffriesiD· 1 shared

Activity by Year

2019-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersMicrobiology

Astrid Melotti

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

MicrobiologybioRxivPreprintSep 12, 2026

Time-resolved transcriptomic profiling of Dictyostelium discoideum infection with Mycobacterium marinum reveals Atg9-dependent restriction via maintenance of vacuole integrity

Jahn Nitschke, Justine Toinon, Frederic Burdet…·Nabil Hanna

This study uses Dictyostelium discoideum to investigate host responses to Mycobacterium marinum infection, identifying Atg9's role in maintaining vacuole integrity and restricting bacterial growth.

DOI 10.64898/2026.09.10.750649

Drosophilabulk RNA-seq

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Cell BiologyeLifePeer-reviewedSep 4, 2026

The insulin / IGF axis is critically important for controlling gene transcription in the podocyte.

Jenny A Hurcombe, Lusyan Dayalan, Fern Barrington…·Richard J. Coward

This study shows that insulin/IGF1 signaling in podocytes regulates gene transcription by affecting spliceosome function and protein modifications.

DOI 10.7554/elife.107791.5

mouseproteomics

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BioinformaticsNature MetabolismPeer-reviewedJun 28, 2021

Multi-omics profiling of living human pancreatic islet donors reveals heterogeneous beta cell trajectories toward type 2 diabetes

Leonore Wigger, Marko Barovic, Andreas‐David Brunner…·Michele Solimena

This study uses multi-omics analysis of pancreatic islet donors to show heterogeneous beta cell changes associated with type 2 diabetes progression.

162 citationstop 1%

humanbulk RNA-seq

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Systems BiologybioRxivPreprintMar 27, 2019

Time-resolved RNA-seq profiling of the infection of Dictyostelium discoideum by Mycobacterium marinum reveals an integrated host response to damage and stress

N. Hanna, Frédéric Burdet, Astrid Melotti…·Thierry Soldati

This study uses time-resolved RNA-seq to analyze D. discoideum gene expression during M. marinum infection, identifying key pathways involved in host response to damage, stress, and metabolic adaptation.

16 citations

Drosophilabulk RNA-seq

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