Author

Adán Andrés Ramírez Rojas

Max Planck Institute for Terrestrial MicrobiologyORCID 0000-0002-4716-602XUnclaimed ORCID profile · follow to get notified of new preprints

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Synthetic Biology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:E. coli· 2 Assay:bulk RNA-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:genome assembly· 1 Research Focus:host-pathogen & immune response· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Daniel SchindleriD· 3 shared Anastassiya MoskalchukiD· 1 shared Bork A. BerghoffiD· 1 shared Cedric K. BrinkmanniD· 1 shared Helene KeutheniD· 1 shared Jens GeorgiD· 1 shared Karina SchulziD· 1 shared Katharina HöferiD· 1 shared

Activity by Year

2024-2024 · peak 3/yr

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10 top collaborators · 19 mutual co-author links

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3 shared papersSynthetic Biology

Daniel SchindlerORCID

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3 papers

Recent·Most cited

A library-based approach allows systematic and rapid evaluation of seed region length and reveals design rules for synthetic bacterial small RNAs

Michel Brück, Tania S. Köbel, Sophie Dittmar, Adán Andrés Ramírez Rojas, Jens Georg, Bork A. Berghoff, Daniel Schindler

The paper evaluates the impact of seed region length on synthetic bacterial small RNAs using a library-based approach and shows 12 nucleotides suffice for regulation with Hfq.

iScience · Aug 23, 2024Peer-reviewedSynthetic Biology

L-SCRaMbLE creates large-scale genome rearrangements in synthetic Sc2.0 chromosomes

Timon A. Lindeboom, María del Carmen Sánchez Olmos, Karina Schulz, Cedric K. Brinkmann, Adán Andrés Ramírez Rojas, Lena Hochrein, Daniel Schindler

The paper demonstrates the use of L-SCRaMbLE to generate large-scale genome rearrangements in synthetic Sc2.0 yeast chromosomes through light-inducible Cre recombinase.

ACS Synthetic Biology · Apr 10, 2024Peer-reviewedSynthetic Biology

T4 phage RNA is NAD-capped and alters the NAD-cap epitranscriptome of Escherichia coli during infection

Maik Wolfram-Schauerte, Helene Keuthen, Anastassiya Moskalchuk, Tobias Ueffing, Nadiia Pozhydaieva, Adán Andrés Ramírez Rojas, Daniel Schindler, Stefanie Kaiser, Nicole Paczia, Katharina Höfer

This study identifies NAD-capped RNAs during T4 phage infection of E. coli, showing dynamic changes in NAD-capping and revealing a phage-encoded Nudix hydrolase involved in NAD-RNA decapping.

bioRxiv · Apr 4, 2024 · PreprintMicrobiology