Author

Manabu Nukaya

University of Wisconsin–MadisonORCID 0000-0002-6204-0978Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Cancer Biology· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Organism:human· 2 Organism:mouse· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1

Frequent Co-Authors

Sean M. Ronnekleiv‐KellyiD· 3 shared Anthony J. VeltriiD· 2 shared Venu Gopal PillarisettyiD· 2 shared Adrian J. McNairniD· 1 shared Alaa R. FarghliiD· 1 shared Alex C. VeithiD· 1 shared Andreas StephanouiD· 1 shared Austin Stram· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersCancer Biology

Sean M. Ronnekleiv‐KellyORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Molecular BiologyJournal of Biological RhythmsPeer-reviewedJul 3, 2026

Single-cell RNA sequencing of murine liver reveals an aligned circadian clock and cell-population specific circadian regulated pathways

Anthony J. Veltri, Manabu Nukaya, Ksenija Korać…·Sean M. Ronnekleiv‐Kelly

This study uses single-cell RNA sequencing to show that circadian clocks are aligned across liver cell populations and identifies cell-specific circadian regulated pathways.

1 citation

mousescRNA-seq

𝕏 PostBluesky

Cancer BiologybioRxivPreprintMay 27, 2026

The DNAJB1-PRKACA Oncogenic Fusion Drives Stepwise Biliary and Pancreatic Carcinogenesis from Intraductal Precursor Lesions

Patrick R. Carney, Manabu Nukaya, Jason A. Carter…·Sean M. Ronnekleiv‐Kelly

This study develops a mouse model of DNAJB1-PRKACA fusion and shows it drives biliary and pancreatic carcinogenesis, with pre-invasive features and Slc16a14 as a biomarker for malignant transformation.

1 citation

mousehuman

𝕏 PostBluesky

Cancer BiologybioRxivPreprintDec 11, 2024

Single-cell multi-omic analysis of fibrolamellar carcinoma reveals rewired cell-to-cell communication patterns and unique vulnerabilities

Alaa R. Farghli, Marina Chan, Marc Samuel Sherman…·Praveen Sethupathy

This study uses single-nucleus multi-omics to analyze fibrolamellar carcinoma, revealing rewired cell communication and potential therapeutic targets.

2 citations

humanscATAC-seq

𝕏 PostBluesky