Yi Qing Lee

Metabolic signals regulate resuscitation speed of antibiotic persister bacteria during infection

The paper shows that L-serine speeds up and arginine slows down the awakening of antibiotic persisters, offering new targets for treating chronic infections.

FROG Analysis Ensures the Reproducibility of Genome Scale Metabolic Models

The paper introduces FROG analysis to standardize reproducibility assessments of genome-scale metabolic models, resulting in full reproducibility of all tested models.

Sweetwater: an underrated crude glycerol for sustainable lipid production in non-conventional yeasts

The paper investigates the use of sweetwater as a feedstock for lipid production by oleaginous yeasts, finding that it enhances lipid accumulation in certain strains.

Mitigating biomass composition uncertainties in flux balance analysis using ensemble representations

This study introduces FBAwEB, an extension of flux balance analysis that accounts for biomass equation variations across conditions by using ensemble representations of macromolecular compositions.

Systematic evaluation of genome-wide metabolic landscapes in lactic acid bacteria reveals diet-induced and strain-specific probiotic idiosyncrasies

This study evaluates genome-wide metabolic landscapes of lactic acid bacteria under various diets, revealing diet- and strain-specific probiotic behaviors and the need for personalized formulations.