Tobias Pietzsch

Mastodon: the Command Center for Large-Scale Lineage-Tracing Microscopy Datasets

Mastodon is a software platform for analyzing large-scale lineage-tracing microscopy datasets, enabling manual and automated cell tracking and lineage analysis in complex 3D geometries.

Sexual dimorphism in the complete connectome of the Drosophila male central nervous system

The paper presents the complete connectome of the Drosophila male central nervous system and compares it to the female connectome, identifying sex-specific and dimorphic neuronal types.

Connectome-driven neural inventory of a complete visual system

A FIB-SEM connectome of the male Drosophila right optic lobe sorts ∼53,000 neurons into 727 types, with neurotransmitter predictions and 577 matched split-GAL4 lines.

OME-Zarr: a cloud-optimized bioimaging file format with international community support

This paper describes OME-Zarr, a cloud-optimized bioimaging file format developed through community collaboration to improve scalability and data access.

Labkit: Labeling and Segmentation Toolkit for Big Image Data

LO_SCPLOWABKITC_SCPLOW is a Fiji plugin for efficient segmentation of big image data, supporting manual and automated routines on single- and multi-channel images and timelapse movies.

Reconstruction of cell lineages and behaviors underlying arthropod limb outgrowth with multi-view light-sheet imaging and tracking

The paper uses multi-view light-sheet imaging and a new tracking tool to reconstruct cell lineages and behaviors during crustacean limb development, revealing how cell proliferation and division orientation drive limb outgrowth.