Jamie Auxillos

This study benchmarks two demultiplexing tools for direct RNA sequencing using IVT spike-ins and species identity, showing their performance differences and the need for calibration.

The paper develops SurpHer, a genetically encoded ratiometric pH sensor, and demonstrates its use in imaging extracellular pH dynamics in human cells and tumor microenvironments.

The paper identifies candidate m6A modification sites on HPV18 early transcripts in HeLa cells using RNA sequencing and perturbation experiments.

This paper introduces a microfluidic device that creates oxygen and pH gradients to study their effects on cancer and stromal cells in the tumor microenvironment.

This paper demonstrates the use of dFnCas12a-VPR for multiplexed gene activation in mammalian cells, showing enhanced activity of 5' crRNAs in arrays.

The paper investigates how cis-regulatory elements (CREs) affect gene expression in budding yeast, finding that their effects depend on both promoter and terminator contexts.