Author

Ming Zheng

Whitehead Institute for Biomedical ResearchORCID 0000-0003-2127-7589Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 2 Biophysics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:development & morphogenesis· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Jonathan E. HenningeriD· 2 shared Richard A. YoungiD· 2 shared Salman F. BananiiD· 2 shared Adrienne VancuraiD· 1 shared Andriy GoychukiD· 1 shared Anne L. RobertsoniD· 1 shared Arup K. ChakrabortyiD· 1 shared Giuseppe Dall’AgneseiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBiophysics

Jonathan E. HenningerORCID

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3 papers

Recent·Most cited

BiophysicsCell SystemsPeer-reviewedMay 26, 2026

Active RNA synthesis patterns nuclear condensates

Andriy Goychuk, Salman F. Banani, Pradeep Natarajan…·Arup K. Chakraborty

The paper investigates how active RNA synthesis influences nuclear condensate patterning by studying nucleolar fibrillar centers and shows that RNA synthesis affects their size, number, and spacing.

15 citationstop 1%

experimental assaystatistical model

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Molecular BiologybioRxivPreprintJun 6, 2025

RNA Dynamics Regulate Transcriptional Condensate Vivacity to Drive Gene Coordination

Koichi Ogami, Ming Zheng, Seiko Yoshino…·Hiroshi I. Suzuki

The paper shows RNA exosome activity maintains transcriptional condensate stability and fluidity, which is essential for coordinated gene expression and cellular homeostasis.

3 citations

humanbulk RNA-seq

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Molecular BiologyMolecular CellPeer-reviewedJul 1, 2023

Transcription factors interact with RNA to regulate genes

Ozgur Oksuz, Jonathan E. Henninger, Robert Warneford-Thomson…·Richard A. Young

The paper identifies RNA-binding as a common feature of transcription factors, showing it contributes to gene regulation and is conserved in vertebrates.

275 citationstop 1%

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