Rémy Bruggmann

The paper presents a telomere-to-telomere genome assembly of the naked mole-rat and compares it with a related species to identify gene losses and duplications associated with unique traits.

This study maps venous remodelling in IPF using multiscale imaging and molecular data, showing venous enlargement correlates with disease severity and poor survival.

This study shows that maternal and postnatal microbiota influence intestinal epithelial maturation and barrier formation through epigenetic and transcriptional mechanisms in offspring.

This paper uses nanopore long-read sequencing to detect CFTR variants in Moroccan individuals, identifying new pathogenic variants and demonstrating the utility of the method for genetic screening in African populations.

This study shows that lineage-specific macrophage environments shape Listeria monocytogenes' metabolic and stress responses, leading to different intracellular survival strategies.

This study shows that platyfish and swordtails (Xiphophorus species) regenerate their hearts with persistent scarring, unlike zebrafish, due to differences in myocardium structure and inflammatory response.

The paper studies how synthetic communities of maize root bacteria interact to alter benzoxazinoid metabolization, leading to increased community tolerance and alternative degradation products.

The paper investigates how hybridization contributes to adaptive radiation in Lake Victoria cichlids by analyzing genotype-phenotype associations across multiple traits.

The paper presents an updated reference genome for the naked mole-rat, identifying gene losses and gains linked to its unique physiological traits.

The paper describes the European Reference Genome Atlas (ERGA) pilot project, which tests a decentralized model for producing high-quality reference genomes across 98 European species.

Scoary2 rapidly associates phenotypic multi-omics data with microbial pan-genomes to identify genes affecting specific metabolic traits.

The paper identifies memory phase-specific genes in Drosophila mushroom bodies using a CREB-DamID approach and validates them through RNAi screens.

This study uses single-cell transcriptomics to characterize cell types in the squid Loligo vulgaris and identifies key markers for major nervous system components.

OpenGenomeBrowser provides a scalable, open-source platform for managing genomic data and performing comparative genomics analyses.

This study uses single-cell transcriptomics to identify ten major cell-type categories in the acoel Isodiametra pulchra, revealing both shared and clade-specific molecular markers.

This study shows that cTBS increases neuroinflammation and inhibits neurogenesis after pneumococcal meningitis in rats.

The paper identifies a subset of pre-existent sox10+ cardiomyocytes in adult zebrafish that expand after injury and are crucial for cardiac regeneration.

The paper identifies genes regulating long-term memory in Drosophila by profiling transcriptomic changes in mushroom bodies and testing candidate genes via RNAi knockdown.

The paper identifies a non-coding copy number variant upstream of TWIST2 that causes a pigmentation trait in belted cattle by affecting melanocyte development.