bioRxivImmunologyPreprint
HER2 mutation-derived neoantigens in NSCLC as actionable targets for TCR therapy
Amanda MontoyaiD, Hui Nie, Peixin JiangiD, Jared K. SloneiD, Yulia V. ShulgaiD, Anika PateliD, Prashant S. MenoniD, Isabella PoliciD, Emily BontekoeiD, Lingzhi HongiD, Minying Zhang, Emane Rose AssitaiD, Sarah ForwardiD, Changsheng XingiD, Bo JiangiD, Drew C. DenigeriD, Gregory A. LizeeiD, Maura Gillison, Navin VaradarajaniD, Xiuning LeiD, Jianjun ZhangiD, Lydia E. KavrakiiD, Sheldon J. J. KwokiD, John Victor HeymachiD, Alexandre ReubeniD
Abstract
HER2 mutations are oncogenic drivers in 1-6% of non-small cell lung cancers (NSCLC), but therapeutic resistance limits the durability of current HER2-targeted treatments. Here, we identify T-cell receptors (TCRs) targeting recurrent HER2 hotspot mutations as a potential immunotherapeutic strategy for HER2-mutant NSCLC. Using neoepitope prediction and antigen-specific T-cell enrichment, we isolated HLA-A*02:01restricted TCRs recognizing HER2 A775insYVMA, S310F, and G776delinsVC mutations, collectively covering approximately 60% of HER2-mutant NSCLC. These TCRs selectively recognized mutant HER2 epitopes without detectable wild-type reactivity and some displayed cross-recognition of related hotspot variants, expanding the spectrum of targetable tumors. The G776delinsVC-specific TCR also exhibited co-receptorindependent activity showcased by its ability to activate CD4+ T cells. Importantly, timelapse single-cell flow cytometry analyses demonstrated that TCR-engineered T cells repeatedly reacquired activated polyfunctional states following serial antigen stimulation, while serial tumor rechallenge assays confirmed sustained cytotoxic activity across multiple rounds of tumor killing. These findings identify recurrent HER2 mutations as shared immunotherapeutic targets and provide a foundation for the development of TCR-based therapies for HER2-mutant NSCLC.
- organism: human
- assay: proteomics
- research focus: drug response / drug discovery
- approach: deep learning
- approach: statistical model
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- T-cell receptors identified by a personalized antigen-agnostic screening approach target shared neoantigen KRAS Q61H
Volker Lennerz, Christoph Doppler, … Steffen Hennig·Frontiers in ImmunologyPeer-reviewed·Mar 17, 2025
- Development of iPSC-Derived T Cells Targeting EGFR Neoantigens in Non-Small Cell Lung Cancer
Kouta Niizuma, Toshinobu Nishimura, … Hiromitsu Nakauchi·Molecular Therapy — Methods & Clinical DevelopmentPeer-reviewed·Jun 18, 2025
- TCR clonality and TCR clonal expansion in the in situ microenvironment of non-small cell lung cancer
Hui Yu, Anastasia Magoulopoulou, … Patrick Micke·Journal for ImmunoTherapy of CancerPeer-reviewed·Aug 1, 2025
- Overcoming immune evasion from post-translational modification of a mutant KRAS epitope to achieve TCR-T cell-mediated antitumor activity
Jihoon William Lee, Emily Y. Chen, … Philip D. Greenberg·bioRxiv·Sep 18, 2024
- Recombinant T cell receptors specific for HLA-A*02:01-restricted neoepitopes containing KRAS codon 12 hotspot mutations
C. M. Rive, E. Yung, … R. A. Holt·bioRxiv·Jun 15, 2020
- A new clustering approach identifies tumor-specific common TCRs with pan-cancer reactivity
Steffen Hennig, Kristin Gennermann, … R. Hammer·bioRxiv·Apr 26, 2025