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Synthetic BiologybioRxiv
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Constructing synthetic-protein assemblies from de novo designed 310 helices

Prasun KumariD, Neil G. PatersoniD, Jonathan ClaydeniD, Derek N. WoolfsoniD

Abstract

Compared with the iconic helix, 310 helices occur much less frequently in protein structures. The different 310-helical parameters lead to energetically less favourable internal energies, and a reduced tendency to pack into defined higher-order structures. Consequently, in natural proteins, 310 helices rarely extend past 6 residues, and do not form regular supersecondary, tertiary, or quaternary interactions. Here, we show that despite their absence in nature, synthetic protein-like assemblies can be built from 310 helices. We report the rational design, solution-phase characterisation, and an X-ray crystal structure for water-soluble bundles of 310 helices with consolidated hydrophobic cores. The design uses 6-residue repeats informed by analysing natural 310 helices, and incorporates aminoisobutyric acid residues. Design iterations reveal a tipping point between -helical and 310-helical folding, and identify features required for stabilising assemblies in this unexplored region of protein-structure space.

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