bioRxivDevelopmental BiologyPreprint
Anatomical and Molecular Characterization of the Zebrafish Meninges
Marina Venero GalanternikiD, Daniel CastranovaiD, Ryan GoberiD, Tuyet A. T. Nguyen, Madeleine I. KentoniD, Gennady Margolin, Aurora KrausiD, Abhinav SuriD, Louis DyeiD, Van N. PhamiD, Adilenne Maese, Melanie HolmgreniD, Aniket V. GoreiD, Bakary Samasa, Allison E. GoldsteiniD, Andrew E. M. DavisiD, Avery Angell SweareriD, James IbeniD, Tianwei LiiD, Steven L. CooniD, Ryan DaleiD, Jeffrey A. FarrelliD, Brant M. WeinsteiniD
Abstract
The meninges are a set of connective tissue layers that surround the central nervous system, protecting the brain from mechanical shock, supporting its buoyancy, guarding it from infection and injury, and maintaining brain homeostasis. Despite their critical role, the molecular identity, developmental origins, and functional properties of the cell types populating the meninges remain poorly characterized. This is in large part due to lack of cell type specific markers and difficulty in visualizing and studying these structures through the thick mammalian skull. Here, we show that the zebrafish, a genetically and experimentally accessible vertebrate, possesses an easily imaged mammalian-like meninges. Anatomical and cellular characterization of its composition via histology, electron microscopy, and confocal imaging shows that the adult zebrafish possesses complex multilayered meninges with double-layered dura mater and intricate leptomeningeal layers. Using single cell transcriptomics, we define the molecular identities of meningeal cell populations, including a unique ependymin (epd)-expressing cell population that constitutes the major cellular component of the leptomeningeal barrier and is essential for brain development and survival. These findings support the use of zebrafish as a useful comparative model for studying the meninges, provide a foundational description for future zebrafish meningeal research, and identify a new Leptomeningeal Barrier Cell that serves as the primary epithelial cell component of the leptomeninges.
- organism: zebrafish
- assay: scRNA-seq
- research focus: cell type annotation
- research focus: differential expression
- research focus: gene regulatory network inference
- approach: statistical model
- approach: experimental assay
- Citations
- 9
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Conserved cellular architecture and developmental mechanisms of the zebrafish meninges
Ashley L. Arancio, Kathryn Wilhem, … D’Juan T. Farmer·bioRxiv·Oct 6, 2026
- Live Imaging of Intracranial Lymphatics in the Zebrafish
Daniel Castranova, Bakary Samasa, … Brant M. Weinstein·Circulation ResearchPeer-reviewed·Nov 2, 2020
- Suppression of transcytosis regulates zebrafish blood-brain barrier development
Natasha M. O’Brown, Sean G. Megason, Chenghua Gu·eLifePeer-reviewed·Aug 20, 2019
- Mural cells protect the adult brain from hemorrhage but do not control the blood-brain barrier in developing zebrafish
Oguzhan Baltaci, Andrea Usseglio Gaudi, … Benjamin M. Hogan·eLifePeer-reviewed·Jun 1, 2026
- A single-cell transcriptomic atlas reveals resident dendritic-like cells in the zebrafish brain parenchyma
Mireia Rovira, Giuliano Ferrero, … Valérie Wittamer·eLifePeer-reviewed·Dec 11, 2025
- Immunohistochemical and ultrastructural analysis of the maturing larval zebrafish enteric nervous system reveals the formation of a neuropil pattern
Phillip A. Baker, Matthew D. Meyer, … Rosa A. Uribe·Scientific ReportsPeer-reviewed·May 6, 2019