bioRxivCell Biology
S-adenosylmethionine synthases specify distinct H3K4me3 populations and gene expression patterns during heat stress
A. A. Godbole, S. Gopalan, T.-K. Nguyen, A. L. Munden, P. Vo, C. A. Lewis, J. B. Spinelli, T. G. Fazzio, A. K. Walker
Abstract
Methylation is a widely occurring modification that requires the methyl donor S-adenosylmethionine (SAM) and acts in regulation of gene expression and other processes. SAM is synthesized from methionine, which is imported or generated through the 1-carbon cycle (1CC). Alterations in 1CC function have clear effects on lifespan and stress responses, but the wide distribution of this modification has made identification of specific mechanistic links difficult. Exploiting a dynamic stress-induced transcription model, we find that two SAM synthases in Caenorhabditis elegans, SAMS-1 and SAMS-4, contribute differently to modification of H3K4me3, gene expression and survival. We find that sams-4 enhances H3K4me3 in heat shocked animals lacking sams-1, however, sams-1 cannot compensate for sams-4, which is required to survive heat stress. This suggests that the regulatory functions of SAM depend on its enzymatic source and that provisioning of SAM may be an important regulatory step linking 1CC function to phenotypes in aging and stress.
- organism: C. elegans
- assay: ChIP-seq
- assay: bulk RNA-seq
- research focus: chromatin & epigenetic regulation
- research focus: gene regulatory network inference
- research focus: host-pathogen & immune response
- approach: experimental assay
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Functional Specialization of S-Adenosylmethionine Synthases Links Phosphatidylcholine to Mitochondrial Function and Stress Survival
Athena L. Munden, Dominique S. Lui, … Amy Karol Walker·bioRxiv·Feb 20, 2025
- Stress-responsive and metabolic gene regulation are altered in low S-adenosylmethionine
Wei Ding, Daniel P Higgins, … Amy Karol Walker·PLoS GeneticsPeer-reviewed·Nov 28, 2018
- Methyl-Metabolite Depletion Elicits Adaptive Responses to Support Heterochromatin Stability and Epigenetic Persistence
S. A. Haws, D. Yu, … J. M. Denu·bioRxiv·Sep 12, 2019
- Repressive S-adenosylmethionine biosynthesis status inhibits transcription of HeT-A retrotransposon in the germline of Drosophila.
Yoshiki Hayashi, Shinjiro Hino, … Satoru Kobayashi·The Journal of BiochemistryPeer-reviewed·Jul 2, 2025
- Evolutionary conservation and multilevel post-translational control of S-adenosyl-homocysteine-Hydrolase in land plants
S. Alegre, J. Pascual, … S. Kangasjarvi·bioRxiv·Dec 20, 2019
- S-adenosylmethionine metabolism buffering is regulated by glycine N-methyltransferase decrease via nuclear ubiquitin-proteasome system
Soshiro Kashio, Masayuki Miura·Proceedings of the National Academy of SciencesPeer-reviewed·Jun 24, 2025