bioRxivBiochemistryPreprint
Tensile Expansion Mass Spectrometry for single cell metabolomics imaging
Jason A. GuerreroiD, Ethan A. OlderiD, Marouen ZammaliiD, Vignesh VenkataramaniiD, Ramita ArampongpuniD, Danielle R. LathamiD, Dalia RiadiD, Jan SchwenzfeieriD, Alexander PotthoffiD, Diandra M. Vaval TayloriD, Joanna E. BurdetteiD, Roberto C. Andresen EguiluziD, Jens SoltwischiD, Lydia KisleyiD, Laura M. SancheziD
Abstract
Matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI) enables the spatial mapping of endogenous biomolecules within native biological specimens; however, it remains limited in achieving single-cell resolution. While advances in instrument modifications, computational processing methods, and tissue-based sample preparation have facilitated high lateral resolutions and cellular level imaging, resolving metabolic heterogeneity at the single-cell level remains challenging for users without specific expertise or custom instrumentation. Here, we present tensile expansion mass spectrometry (TExMS), a cost-effective approach for single-cell MALDI-MSI that is compatible with commercial MSI instrumentation. TExMS utilizes highly stretchable hydrogels as a substrate for live-cell seeding, attachment, and desiccation, avoiding the need for chemical fixation and enabling the retention of both intracellular and extracellular metabolites, including media-derived components that are lost during fixation and washing. We used TExMS to expand individual cells of a human high-grade serous ovarian cancer (HGSOC) cell line and spatially map their small molecule ( View larger version (28K): org.highwire.dtl.DTLVardef@18f8c09org.highwire.dtl.DTLVardef@132bc4aorg.highwire.dtl.DTLVardef@1e7c2caorg.highwire.dtl.DTLVardef@a586cf_HPS_FORMAT_FIGEXP M_FIG C_FIG
- organism: human
- assay: metabolomics
- assay: imaging
- research focus: spatial domain detection
- research focus: cell type annotation
- research focus: imputation
- approach: experimental assay
In-depth summary
Claude Opus 5.5 · xhigh effort · 8 Nov 2026 · from the full text of version 1 (20 Aug 2026) · CC BY 4.0
Tensile stretching of live, unfixed OVCAR8 cells on a fibronectin-functionalized double-network hydrogel expands them about 1.7x linearly, enabling single-cell MALDI metabolite imaging on unmodified commercial instruments.
Commercial MALDI imaging is limited to roughly 5–10 μm pixels, near mammalian cell size; transmission-mode or post-ionization upgrades are costly, and prior expansion MSI methods (GAMSI, TEMI, ExIMS, 10X ExMSI) used fixed, gel-swollen tissues with little focus on single-cell small molecules. TExMS instead mechanically stretches living adherent cells without fixation, gelation or osmotic swelling, adding sampling points per cell while retaining diffusible metabolites.
Key results
ShownMultiaxial stretching of hydrogel-adhered OVCAR8-RFP cells enlarged both whole-cell and nuclear areas with cytosolic RFP retained (implying intact membranes), though realized linear expansion fell well below the device's theoretical maximum.
Mean cell area 349 ± 110 to 1046 ± 366 µm^2 (3.0-fold; ∼1.7x linear; p = 1.02 × 10^-5); nuclear area 148 ± 72 to 255 ± 109 µm^2 (1.7-fold; ∼1.3x linear; p = 1.06 × 10^-11); paired t-test on four independently prepared hydrogels; theoretical device maximum ∼3.8x. · Visualization of OVCAR8-RFP under mechanical…; Figure legends
ShownTExMS runs at a 10 µm raster were much shorter than 5 µm microgrid and ∼1 µm t-MALDI acquisitions, while the stretching gave an estimated effective pixel size of about 5.9 µm^2.
Total acquisition ∼45 minutes (TExMS) vs 1 hour and 9 minutes (fixed cells, 10 µm), 6 hours 13 minutes (MALDI-2 microgrid, 5 µm) and 18 hours and 16 minutes (t-MALDI, ∼1 µm); effective TExMS pixel ∼5.9 µm^2 observed vs ∼2.6 µm^2 expected at ∼3.8x expansion. · Comparison of TExMS with other single cell…; Figure legends
SuggestedAfter normalizing to effective pixel area, TExMS gave higher adenine signal per unit area than conventional 5 and 10 µm MALDI-MSI. It also retained L-glutamate, which fixation and washing in conventional preparations appeared to remove.
Reference ion adenine [M-H]- at m/z 134.0472 tracked in six individual cells per condition across four workflows; TExMS intensities normalized using the ∼1.7x linear expansion; the text gives no numeric intensities or statistical test; L-glutamate comparison is qualitative (Figure 3h). · Comparison of TExMS with other single cell…; Figure legends
SuggestedGuided by an in-house LC-MS/MS metabolome library, TExMS mapped more glycolysis, amino acid and TCA-cycle intermediates than t-MALDI. Malic and succinic acid co-localized away from a putative membrane lipid, a pattern the authors interpret as mitochondrial.
t-MALDI on unexpanded cells annotated ATP and AMP; TExMS annotated glucose-6-phosphate, pyruvate, glycerol 3-phosphate, branched-chain amino acids, and citric, isocitric, α-ketoglutaric, succinic and malic acids; malic m/z 133.0142, succinic m/z 117.0193, lipid m/z 152.8998; 10 µm pixels. · TExMS maps metabolic responses to cellular…; Figure legends
SuggestedUnder 24-hour serum starvation, OVCAR8-RFP cells became rounded and non-adherent, and TExMS detected significant shifts in several metabolites, including the glycolytic regulators pyruvic acid and glucose-6-phosphate.
Serum-starved vs serum-treated (10% FBS) cells; ROI intensities exported, outliers removed by Grubbs' test (α = 0.05), log fold-change computed and Welch's t-test applied; text reports significance but no fold-change magnitudes, p-values or cell counts. · TExMS maps metabolic responses to cellular…; Figure legends
Methods, data and reproducibility
Live OVCAR8-RFP cells grown on a fibronectin/sulfo-SANPAH-functionalized alginate-Ca^2+/polyacrylamide hydrogel are stretched multiaxially by a 3D-printed iris device, desiccated, matrix-coated and imaged at 10 µm pixels on a timsTOF fleX; results are benchmarked against fixed-cell 10 µm, 5 µm microgrid and ∼1 µm transmission-mode MALDI.
- OVCAR8-RFP high-grade serous ovarian cancer cells grown on functionalized hydrogels, Hoechst-stained and imaged before and after tensile expansion · human · n = four independently prepared hydrogels
- Fixed OVCAR8-RFP cells on poly-D-lysine glass imaged at 10 µm, 5 µm (microgrid) and ∼1 µm (t-MALDI) for comparison with TExMS · human · n = six individual cells per condition
- Serum-treated (10% FBS) versus 24-hour serum-starved OVCAR8-RFP cells imaged by TExMS · human
- In-house OVCAR8-RFP metabolome library from RPLC and HILIC LC-MS/MS of cell extracts in both ion polarities · human · n = 6 million cells
- Murine ovarian surface epithelial (MOSE) and oviductal epithelial (MOE) cells tested for adhesion to unfunctionalized hydrogel · mouse
- Methods & tools
- Bruker timsTOF fleX (MALDI-MSI and LC-MS/MS), Transmission-mode MALDI (t-MALDI) modified timsTOF, timsTOF fleX MALDI-2 with microgrid, Sulfo-SANPAH crosslinking with fibronectin, NEDC, norharmane and CHCA MALDI matrices, HTX TM-Sprayer and Bruker superlimator, 3D-printed iris expansion device with Arduino/C++ controller, SCiLS Lab Pro, MetaboScape, GNPS2 and HMDB, ImageJ (Fiji), BioRender Graphing (paired t-test, Welch's t-test)
- Reproducibility gaps
- No code or data repository or accession is given; the Arduino C++ iris-control script is cited only as previously described, and t-MALDI methods and matrix optimization are deferred to Supporting Information.
Limitations (6)
- Sample preparation takes about four days (hydrogel synthesis, functionalization, seeding, incubation, drying) versus 1-2 days for conventional single-cell MALDI-MSI, limiting throughput despite fast acquisition. · stated by the authors
- Observed linear expansion (∼1.7x for cells, ∼1.3x for nuclei) falls short of the ∼3.8x device maximum, likely from adhesion and cytoskeletal constraints; the true factor needs an independent biological marker, and manual versus automated area measurement may skew estimates. · stated by the authors
- Hydrogels mounted for fluorescence compatibility survive only about 20 minutes under vacuum before flaking, restricting multimodal regions; aluminium tape mounting extends this to 1-5 hours but rules out fluorescence imaging. · stated by the authors
- No single matrix or ion polarity covered all target pathways; the metabolite maps were assembled from several acquisitions using different matrices and positive and negative modes. · stated by the authors
- The intensity comparison is confounded: TExMS used 1000 laser shots per pixel versus 500 (fixed 10 µm), 25 (microgrid) and 15 (t-MALDI), with different matrices and deposition, and only six cells per condition without reported statistics. · noted in this summary
- Live cells are stretched and dried for hours with no described metabolic quenching, so metabolite levels may shift during preparation; annotations are putative matches to an in-house library, and the serum-starvation changes lack reported effect sizes. · noted in this summary
Read this if you image metabolites in cultured single cells on a commercial MALDI instrument and want a fixation-free alternative to transmission-mode hardware or expansion-microscopy-style MSI.
- Citations
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