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VAMPIRE is a k-mer-based tool for TR discovery and analysis, revealing new insights into human and nonhuman primate centromeres and subtelomeres.

This study identifies genetic adaptations in three Acrocomia palm species using GBS, revealing population structure and candidate genes for traits like oil production and stress tolerance.

The paper presents chromosome-level genomes for two orchids, revealing insights into their evolutionary relationships and genome size variation.

This study uses whole-genome sequencing of Anopheles gambiae s.l. mosquitoes to uncover fine-scale population structure and insecticide resistance mechanisms in central Ghana.

This study investigates how Zymoseptoria tritici responds to temperature shocks using transcriptomics and GWAS, identifying genes and loci involved in thermal adaptation.

vaccines.watch is an interactive platform that uses global genome data to monitor vaccine targets and interventions, enabling analysis of vaccine target diversity and genomic landscape gaps.

BOMS improves cell segmentation in spatial transcriptomics by using mRNA spot locations and gene labels without auxiliary stains, achieving comparable performance to existing methods with faster execution.

The paper presents a high-quality chromosome-scale genome assembly and transcriptome of the Ural owl to support conservation efforts and genetic research.

The paper investigates the biological impact of GBA1 mutations using multi-omics in isogenic iPSC lines, finding limited overlapping results across cell types and suggesting RNA-based quantitation may not be optimal for characterizing GCase mechanisms.

This paper provides genome and transcriptomic sequences of three invasive insect species, offering resources for population genomics and pest management.

This study identifies TERRA RNA upregulation in aged human cells and links it to aging and Alzheimer's disease.

This study identifies a unique mutational signature, SBS87, in testicular germ cell tumors (TGCTs) that resembles thiopurine-induced DNA damage and is associated with tumor latency and telomere elongation.

The paper identifies and analyzes chromosomal inversions in the flat oyster, showing their role in adaptation and phylogeography through genomic and population studies.

The paper uses direct RNA nanopore sequencing to identify RNA modification changes in human pancreatic beta-cells after glucose stimulation, finding 1,697 differentially modified sites linked to type 2 diabetes genes.

The paper investigates how cBAF and PBAF chromatin remodeling complexes regulate nucleosomal and subnucleosomal structures at promoters, enhancers, and REST sites, revealing distinct functional roles for their subunits.

The paper identifies a novel CD26+ fibroblast subpopulation in atherosclerosis using CITE-seq and shows its expansion into fibrous caps during disease progression.

The paper develops an iterative lysis protocol to enrich cyanobacterial DNA from xenic cultures, improving genome assembly quality and reducing heterotrophic microbiome contamination.

This paper introduces ccMPRA, a method that combines Capture-C and MPRA to study promoter interactions and regulatory activity, identifying enhancers and silencers.

The paper analyzes G-quadruplexes in T2T genomes of great apes, finding shared and species-specific G4s, their methylation patterns, and their potential role in gene regulation and adaptation.

The paper introduces a scalable Perturb-seq platform called FiCS Perturb-seq and releases X-Atlas/Orion, a large Perturb-seq atlas, to improve foundation model development through dose-dependent genetic effects.