Author

A. A. Deniz

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2 Biochemistry· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Research Focus:cell type annotation· 2 Research Focus:chromatin & epigenetic regulation· 1 Assay:electronic health records· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Approach:microscopy & imaging analysis· 1 Research Focus:protein folding & dynamics· 1

Frequent Co-Authors

A. Adams· 1 shared A. N. Milin· 1 shared B. MacTavish· 1 shared C. C. Williams· 1 shared C. Hariharan· 1 shared D. A. Grotjahn· 1 shared D. Kojetin· 1 shared D. Park· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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Curved chords = mutual co-authorship

1 shared paperMicrobiology

A. Adams

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Reentrant DNA shells tune polyphosphate condensate size

R. Chawla, J. K. A. Tom, T. Boyd, D. A. Grotjahn, D. Park, A. A. Deniz, L. R. Racki

This study investigates how DNA interacts with polyphosphate-Mg2+ condensates, showing DNA forms reentrant shells that regulate condensate size and DNA structure.

bioRxiv · Sep 13, 2023Biophysics

Spatial and functional arrangement of Ebola virus polymerase inside phase-separated viral factories

J. Fang, G. Castillon, S. Phan, S. McArdle, C. Hariharan, A. Adams, M. H. Ellisman, A. A. Deniz, E. O. Saphire

This study investigates the spatial and functional organization of Ebola virus polymerase within viral factories, revealing distinct structural forms and their roles in viral replication.

bioRxiv · Dec 27, 2022Microbiology

Structural basis of interdomain communication in PPARγ

S. A. Mosure, P. Munoz-Tello, K.-T. Kuo, B. MacTavish, X. Yu, D. Scholl, C. C. Williams, T. S. Strutzenberg, J. Li, J. Bass, R. Brust, E. Kalkhoven, A. A. Deniz, P. R. Griffin, D. Kojetin

This study identifies a conserved Trp-Pro motif in PPARγ AF-1 that undergoes cis/trans isomerization, enabling interdomain communication with the LBD and affecting transcriptional activity.

bioRxiv · Jul 13, 2022 · PreprintBiophysics

Divalent cations can control a switch-like behavior in heterotypic and homotypic RNA coacervates

P. L. Onuchic, A. N. Milin, I. Alshareedah, A. A. Deniz, P. R. Banerjee

This study shows that divalent cations influence the switch between heterotypic and homotypic RNA coacervates by altering their physical and chemical properties.

bioRxiv · Feb 27, 2019Biochemistry