Author

Andrew Pan

University of California, San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Assay:CRISPR screen· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

A. S. M. WaliullahiD· 1 shared Barbara DziegielewskaiD· 1 shared Biswarathan RamaniiD· 1 shared Bon Q. TrinhiD· 1 shared Daniel Geoffrey TeneniD· 1 shared Indigo V.L. RoseiD· 1 shared Jeffrey Craig· 1 shared Jorge J. PalopiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperMolecular Biology

A. S. M. WaliullahORCID

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2 papers

Recent·Most cited

An integrated DNA interactome and transcriptome profiling reveals a PU.1/enhancer RNA-mediated Feed-forward Regulatory Loop Regulating monocyte/macrophage development and innate immune functions

A. S. M. Waliullah, Kevin Qiu, Barbara Dziegielewska, Minh L. Tran, Nicholas N. Nguyen, Leran Wang, Andrew Pan, Natalie Segovia, Simone Ummarino, Junyan Zhang, Tuan M. Nguyen, Jeffrey Craig, Daniel Geoffrey Tenen, Bon Q. Trinh

This study identifies a PU.1/LOUP feed-forward regulatory loop that promotes monocyte/macrophage differentiation and innate immune functions through enhancer RNA-mediated mechanisms.

bioRxiv · Feb 19, 2025 · PreprintMolecular Biology

CRISPR screening by AAV episome-sequencing (CrAAVe-seq) is a highly scalable cell type-specific in vivo screening platform

Biswarathan Ramani, Indigo V.L. Rose, Noam Teyssier, Andrew Pan, Spencer Danner-Bocks, Tanya Sanghal, Lin Yadanar, Ruilin Tian, Keran Ma, Jorge J. Palop, Martin Kampmann

The paper introduces CrAAVe-seq, an AAV-based CRISPR screening platform for in vivo cell type-specific analysis, demonstrating its scalability and sensitivity in identifying neuron-essential genes.

bioRxiv · Jun 13, 2023 · PreprintGenomics