Author

Bettina Semsch

Karolinska Institutet

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Developmental Biology· 4

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Research Focus:clustering· 4 Organism:mouse· 4 Assay:scRNA-seq· 4 Research Focus:cell type annotation· 3 Approach:experimental assay· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Emma Rachel AnderssoniD· 4 shared Igor I. AdameykoiD· 3 shared Jingyan HeiD· 3 shared Sergey V. IsaeviD· 3 shared Alek G. EricksoniD· 2 shared Jia SuniD· 2 shared Johan LorentziD· 2 shared Jonas FriséniD· 2 shared

Activity by Year

2024-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 43 mutual co-author links

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4 shared papersDevelopmental Biology

Emma Rachel AnderssonORCID

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4 papers

Recent·Most cited

In utero barcoding of mouse mesoderm reveals the clonal architecture of organ mesenchyme

Jingyan He, Johan Lorentz, Agustín Andrés Corbat, Sergey V. Isaev, Raphaël Mauron, Sandra de Haan, Lenka Belicová, Jia Sun, Bettina Semsch, Noémi Van Hul, Robert Tonoian, John R. Wilson‐Kanamori, Ulrika Marklund, Marcel Martin, Neil Cowan Henderson, , Emma Rachel Andersson

The paper uses in utero barcoding and single-cell transcriptomics to map clonal relationships in mouse mesoderm-derived tissues, revealing lineage relationships in liver and heart mesenchyme.

bioRxiv · Sep 23, 2026 · PreprintDevelopmental Biology

Resolving cell lineages and gene functions in the developing mouse gastrointestinal tract using in utero transduction

Ziwei Liu, Krishnanand Padmanabhan, Jingyan He, Katrin Mangold, Bettina Semsch, Jia Sun, Viktoria Knoflach, Sarantis Giatrellis, Johan Lorentz, Khachatur Dallakyan, Christian Göritz, Emma Rachel Andersson, Ulrika Marklund

This study uses in utero lentiviral transduction to resolve clonal relationships and gene functions in developing mouse gut lineages, revealing distinct developmental patterns in mesenchyme and enteric nervous system.

Proceedings of the National Academy of Sciences · Sep 9, 2026Peer-reviewedDevelopmental Biology

Single-cell, clonal and spatial atlases of cranial placodes illuminate their specification and evolution

А. Р. Муртазина, Yuliia Fatieieva, Felix Waern, Helen R. Maunsell, Ankita Thawani, Bettina Semsch, Johan Boström, Caleb C. Reagor, Polina Kameneva, Karina R. Araslanova, Sergey V. Isaev, Franziska Schelb, Kaj Fried, Alek G. Erickson, Alexander V. Klimovich, , Igor I. Adameyko

The paper integrates single-cell, spatial, and clonal data to study cranial placode development and evolution, revealing continuous transcriptional landscapes and shared progenitors between placodes.

bioRxiv · Apr 3, 2026 · PreprintDevelopmental Biology

Unbiased profiling of multipotency landscapes reveals spatial modulators of clonal fate biases

Alek G. Erickson, Sergey V. Isaev, Artem V. Artemov, Jingyan He, Bettina Semsch, А. Р. Муртазина, Jia Sun, Katrin Mangold, Anthi Chalou, Jonas Frisén, Michael Ratz, Emma Rachel Andersson, Peter V. Kharchenko, Igor I. Adameyko

The paper profiles clonal landscapes in mouse embryos to reveal spatial modulators of clonal fate biases using single-cell lineage tracing and clone2vec.

bioRxiv · Nov 15, 2024 · PreprintDevelopmental Biology