Author

K. Hokamp

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5 Bioengineering· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 4 Research Focus:differential expression· 4 Approach:experimental assay· 4 Research Focus:gene regulatory network inference· 4 Research Focus:cell type annotation· 3 Organism:Arabidopsis· 2 Organism:bacteria (other)· 2 Organism:mouse· 2

Frequent Co-Authors

C. Kröger· 3 shared A. V. Predeus· 2 shared D. L. Hammarlöf· 2 shared F. Roche· 2 shared J. C. D. Hinton· 2 shared A. A. Miranda-CasoLuengo· 1 shared A. D. S. Cameron· 1 shared A. G. Bowie· 1 shared

Activity by Year

2017-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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3 shared papersMicrobiology

C. Kröger

Mutual co-authors in cluster

Author profile →

7 papers

Recent·Most cited

Global analysis of the RNA-RNA interactome in Acinetobacter baumannii AB5075 uncovers a small regulatory RNA repressing the virulence-related outer membrane protein CarO

F. J. Hamrock, D. Ryan, A. Shaibah, A. S. Ershova, A. Mogre, M. M. Sulimani, S. Reichardt, K. Hokamp, A. J. Westermann, C. Kröger

The paper identifies a small regulatory RNA, Aar, that represses virulence-related genes in A. baumannii through antisense base-pairing, revealing sRNA-mediated gene regulation in this pathogen.

bioRxiv · Dec 4, 2023Microbiology

Mechanically activated bone cells drive vessel formation via an extracellular vesicle mediated mechanism

N. Shen, M. Maggio, I. Woods, K. Eichholz, E. Stavenschi, M. Lowery, F. M. Roche, K. Hokamp, L. O'Driscoll, D. A. Hoey

This study shows mechanically activated bone cells promote vessel formation through extracellular vesicles, which contain miRNAs linked to angiogenesis, offering a potential therapeutic for bone repair.

bioRxiv · Feb 10, 2023 · PreprintBioengineering

Enhanced flavour profiles through radicicol induced genomic variation in S. pastorianus lager yeast

R. de la Cerda, G. Thompson, P. Zhang, K. Hokamp, F. Roche, S. Carlin, U. Vrhovsek, U. M. Bond

This study enhances flavour profiles in S. pastorianus lager yeast by inducing genomic variation through radicicol-mediated aneuploidy and selection for aromatic amino acid production.

bioRxiv · May 17, 2022 · PreprintMicrobiology

Next generation SARM1 knockout and epitope tagged CRISPR-Cas9-generated isogenic mice reveal that SARM1 does not participate in regulating nuclear transcription, despite confirmation of protein expression in macrophages

C. G. Doran, R. Sugisawa, M. Carty, F. Roche, C. Fergus, K. Hokamp, V. P. Kelly, A. G. Bowie

This study generates SARM1 knockout and epitope-tagged mice to show SARM1 is expressed in macrophages but does not regulate transcription in these cells.

bioRxiv · Aug 25, 2021Immunology

Niche-specific profiling reveals transcriptional adaptations required for the cytosolic lifestyle of Salmonella enterica

L. A. Knodler, T. R. Powers, A. L. Haeberle, D. L. Hammarlöf, J. A. Cundiff, A. V. Predeus, K. Hokamp, J. C. D. Hinton

This study identifies niche-specific transcriptional adaptations in Salmonella enterica for cytosolic and vacuolar lifestyles using RNA-seq and microscopy.

bioRxiv · Jan 11, 2021Microbiology

Adding function to the genome of African Salmonella ST313

R. Canals, D. L. Hammarlöf, C. Kröger, S. V. Owen, W. Y. Fong, L. Lacharme-Lora, X. Zhu, N. Wenner, S. E. Carden, J. Honeycutt, D. M. Monack, R. A. Kingsley, P. Brownridge, R. R. Chaudhuri, W. P. M. Rowe, , J. Hinton

The paper compares genomic and transcriptomic differences between Salmonella ST313 and ST19 isolates to identify phenotypic variations and a novel plasmid maintenance system.

bioRxiv · Oct 22, 2018Microbiology

The primary transcriptome, small RNAs, and regulation of antimicrobial resistance in Acinetobacter baumannii

C. Kröger, K. D. MacKenzie, E. Y. Al-Shabib, M. W. B. Kirzinger, D. M. Suchan, T.-C. Chao, V. Akulova, A. A. Miranda-CasoLuengo, V. A. Monzon, T. Conway, S. K. Sivasankaran, J. C. D. Hinton, K. Hokamp, A. D. S. Cameron

This study identifies transcriptome architecture and small RNAs in Acinetobacter baumannii, revealing regulatory mechanisms and antimicrobial resistance traits.

bioRxiv · Dec 19, 2017Microbiology