Author

K. Nomikou

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:host-pathogen & immune response· 2 Approach:machine learning (classical)· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Assay:clinical cohort / trial· 1 Approach:experimental assay· 1

Frequent Co-Authors

M. Palmarini· 3 shared A. D. S. Filipe· 2 shared A. da Silva Filipe· 2 shared C. Ligios· 2 shared D. J. Pascall· 2 shared E. Breard· 2 shared G. Ilia· 2 shared G. Puggioni· 2 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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3 shared papersMicrobiology

M. Palmarini

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

A Machine Learning Framework to Identify the Correlates of Disease Severity in Acute Arbovirus Infection

V. Herder, M. Caporale, O. MacLean, D. Pintus, X. Huang, K. Nomikou, N. Palmalux, J. Nichols, R. Scivoli, C. Boutell, A. Taggart, J. Allan, H. Malik, G. Ilia, Q. Gu, , M. Palmarini

This study uses machine learning to identify key viral and host processes associated with varying severity in bluetongue virus infection in sheep.

bioRxiv · Feb 23, 2024 · PreprintMicrobiology

Phenotyping the virulence of SARS-CoV-2 variants in hamsters by digital pathology and machine learning

G. R. Meehan, V. Herder, J. Allan, X. Huang, K. Kerr, D. C. Mendonca, G. Ilia, D. Wright, K. Nomikou, Q. Gu, S. M. Arias, G. De Lorenzo, V. Cowton, N. Upfold, N. Palmalux, , M. Palmarini

This study develops quantitative pipelines using digital pathology and machine learning to assess the virulence of SARS-CoV-2 variants in hamsters, showing that some Omicron sub-lineages have regained virulence.

bioRxiv · Aug 1, 2023Microbiology

The circulating SARS-CoV-2 spike variant N439K maintains fitness while evading antibody-mediated immunity

E. C. Thomson, L. E. Rosen, J. G. Shepherd, R. Spreafico, A. da Silva Filipe, J. A. Wojcechowskyj, C. Davis, L. Piccoli, D. J. Pascall, J. Dillen, S. Lytras, N. Czudnochowski, R. Shah, M. Meury, N. Jesudason, , J. Nichols

The paper shows the N439K SARS-CoV-2 spike variant maintains replication fitness while evading antibody neutralization.

bioRxiv · Nov 4, 2020Microbiology

Evolutionary stasis of an RNA virus indicates arbovirus re-emergence triggered by accidental release

D. J. Pascall, K. Nomikou, E. Breard, S. Zientara, A. da Silva Filipe, B. Hoffmann, M. Jacquot, J. B. Singer, K. De Clercq, A. Botner, C. Sailleau, C. Viarouge, C. Batten, G. Puggioni, C. Ligios, , M. Palmarini

This study uses genomic data to show that a BTV-8 virus strain re-emerged in 2015 without significant evolution, suggesting accidental release rather than natural persistence.

bioRxiv · Dec 11, 2019Evolutionary Biology