Author

K. Swaminathan

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Plant Biology· 2 Biochemistry· 1 Biophysics· 1 Cell Biology· 1 Immunology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 4 Research Focus:cell type annotation· 3 Assay:bulk RNA-seq· 2 Research Focus:cell signaling & trafficking· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Approach:statistical model· 2

Frequent Co-Authors

J. E. Elias· 2 shared A. A. Carrell· 1 shared A. D. deSilva· 1 shared A. G. Hendricks· 1 shared A. J. Davidson· 1 shared A. J. Hilmer· 1 shared A. Lipzen· 1 shared A. Marshall-Colon· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 8 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBiochemistry

J. E. Elias

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

The stem cell-type transcriptome of bioenergy sorghum reveals the spatial regulation of secondary cell wall networks

J. Fu, B. McKinley, B. James, W. Chrisler, L. M. Markillie, M. J. Gaffrey, H. D. Mitchell, G. Orr, K. Swaminathan, J. Mullet, A. Marshall-Colon

The paper identifies cell-type specific gene expression and regulatory networks in bioenergy sorghum stems to enable engineering for biofuel production.

bioRxiv · Apr 22, 2023 · PreprintPlant Biology

Optogenetic control of kinesins -1, -2, -3, and dynein reveals their specific roles in vesicular transport

S. Nagpal, S. Wang, K. Swaminathan, F. Berger, A. G. Hendricks

This study uses optogenetic inhibitors to investigate the roles of kinesins-1, -2, -3, and dynein in vesicular transport, revealing their specific contributions to endosome and lysosome motility.

bioRxiv · Apr 18, 2023Biophysics

JGI Plant Gene Atlas: An updateable transcriptome resource to improve structural annotations and functional gene descriptions across the plant kingdom

A. Sreedasyam, C. Plott, M. S. Hossain, J. T. Lovell, J. Grimwood, J. W. Jenkins, C. Daum, K. Barry, J. Carlson, S. Shu, J. Phillips, M. Amirebrahimi, M. Zane, M. Wang, D. Goodstein, , E Cooper

The paper introduces the JGI Plant Gene Atlas, a resource that improves gene function annotations by analyzing transcript abundance across 18 species and 604 tissues, identifying 64,620 genes with unknown functions.

bioRxiv · Sep 30, 2022 · PreprintPlant Biology

An efficient urine peptidomics workflow identifies chemically defined dietary gluten peptides from patients with celiac disease

B. A. Palanski, N. Weng, L. Zhang, A. J. Hilmer, L. A. Fall, K. Swaminathan, B. Jabri, C. Sousa, N. Q. Fernandez-Becker, C. Khosla, J. E. Elias

The paper develops a urine peptidomics workflow to identify chemically defined dietary gluten peptides in celiac disease patients, revealing differences from controls.

bioRxiv · Mar 17, 2021Biochemistry

WASP restricts active Rac to maintain cells’ front-rear polarisation

C. Amato, P. A. Thomason, A. J. Davidson, K. Swaminathan, S. Ismail, L. M. Machesky, R. H. Insall

This study shows WASP restricts active Rac to the front of cells to maintain front-rear polarity, but its interaction with Rac is not required for actin polymerization.

bioRxiv · Apr 10, 2019Cell Biology

Immuno-proteomic interrogation of dengue infection reveals novel HLA haplotype-specific MHC-I antigens

K. Swaminathan, N. Olsson, P. J. Lund, C. D. Marceau, L. E. Wagar, Y. Tian, J. Sidney, D. Weiskopf, K. Majzoub, A. D. deSilva, E. Harris, M. M. Davis, A. Sette, J. E. Carette, J. E. Elias

This study identifies novel MHC-I antigens specific to dengue virus infection using an immuno-proteomics approach, revealing ligands associated with distinct HLA haplotypes and T-cell recognition.

bioRxiv · Nov 19, 2018 · PreprintImmunology