Author

Karen Mungall

Canada's Michael Smith Genome Sciences Centre

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genomics· 2 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Organism:human· 5 Assay:whole-genome sequencing· 4 Approach:statistical model· 3 Research Focus:variant calling· 3 Research Focus:database / resource· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Approach:benchmark study· 1

Frequent Co-Authors

Eric Chuah· 4 shared Marco A. MarraiD· 4 shared Andrew J. J. MungalliD· 3 shared Janessa J. LaskiniD· 3 shared Steven J.M. JonesiD· 3 shared Ana Fisic· 2 shared Daniel John RenoufiD· 2 shared Eleanor Lewis· 2 shared

Activity by Year

2022-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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Curved chords = mutual co-authorship

4 shared papersGenomics

Eric Chuah

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Parent-of-Origin-Aware Genomic Analysis to Enhance Cascade Testing in Pancreatic Cancer: A Population-Based Study

Pheobe TM Cheng, Carol Cremin, Lílian Córdova, Vahid Akbari, Tiffany Y. Leung, Eugene Cheung, Angela C. Bedard, Quan Hong, Ana Fisic, Jennifer Nuk, Mary‐Jill Asrat, Inglis Angela, Allison Mindlin, Melanie O’Loughlin, Katherine Dixon, , Kasmintan A Schrader

This study evaluates Parent-of-Origin-Aware genomic analysis (POAga) to improve cascade testing in pancreatic cancer families by clarifying familial risk.

medRxiv · Oct 31, 2026 · PreprintGenetic & Genomic Medicine

EpiATLAS - a reference for human epigenomic research

Quirin Manz, Misha Bilenky, Dennis Hecker, Nihit Aggarwal, Juliana Estefania Arcila-Galvis, Shamim Ashrafiyan, Nina Baumgarten, Fatemeh Behjati Ardakani, Paulo R. Branco Lins, Charles E. Breeze, David Brownlee, David Bujold, Alec R. Chapman, Savio Ho-Chit Chow, Tevfik Umut Dincer, , Samuel A. J. R. Aparicio

EpiATLAS provides a comprehensive collection of human reference epigenomes to advance epigenomic research and understanding of cellular function and disease.

bioRxiv · Jun 26, 2026 · PreprintGenomics

Genomic structures and regulation patterns at HPV integration sites in cervical cancer

Vanessa Porter, Michelle Ng, Kieran O’Neill, Signe MacLennan, Richard Corbett, Luka Culibrk, Zeid Hamadeh, Marissa Iden, Rachel Schmidt, Shirng‐Wern Tsaih, Carolyn Nakisige, Martin Origa, Jackson Orem, Glenn Chang, Jeremy Fan, , Marco A. Marra

The paper uses long-read sequencing to analyze HPV integration sites in cervical cancer genomes, identifying structural and epigenetic impacts of integration.

Genome Research · Apr 1, 2025Peer-reviewedGenomics

Mapping in silico genetic networks of the KMT2D tumour suppressor gene to uncover novel functional associations and cancer cell vulnerabilities

Yuka Takemon, Erin Pleasance, Alessia Gagliardi, Christopher S. Hughes, Veronika Csizmók, Kathleen Wee, Diane L.N. Trinh, Ryan D. Huff, Andrew J. J. Mungall, Richard A. Moore, Eric Chuah, Karen Mungall, Eleanor Lewis, Jessica Nelson, Howard John Lim, , Marco A. Marra

bioRxiv · Jan 17, 2024 · PreprintBioinformatics

A Platform for Oncogenomic Reporting and Interpretation

Caralyn Reisle, Laura M. Williamson, Erin Pleasance, Anna Davies, Brayden Pellegrini, Dustin W. Bleile, Karen Mungall, Eric Chuah, Martin R. Jones, Yussanne P. Ma, Eleanor Lewis, Isaac Beckie, David Pham, Raphael Matiello Pletz, Amir Muhammadzadeh, , Steven J.M. Jones

PORI is an open-source platform for interpreting somatic variants in cancer, demonstrating that 88.2% of TCGA tumors have at least one potentially targetable alteration.

Nature Communications · Feb 9, 2022Peer-reviewedBioinformatics