Author

M. Nakagawa

Kyoto University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Microbiology· 2 Cell Biology· 1 Ecology· 1 Immunology· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 5 Approach:experimental assay· 4 Approach:statistical model· 4 Assay:bulk RNA-seq· 3 Research Focus:cell type annotation· 3 Research Focus:differential expression· 3 Assay:metagenomics· 3 Research Focus:clustering· 2

Frequent Co-Authors

T. Shibata· 3 shared H. N. Coleman· 2 shared L. M. Ward· 2 shared S. E. McGlynn· 2 shared T. Sasagawa· 2 shared A. Idei· 1 shared A. Krez· 1 shared Akifumi Takaori‐KondoiD· 1 shared

Activity by Year

2019-2026 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 9 mutual co-author links

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3 shared papersCell Biology

T. Shibata

Mutual co-authors in cluster

Author profile →

8 papers

Recent·Most cited

Chromatin landscape and epigenetic heterogeneity of acute myeloid leukemia

Yotaro Ochi, Markus Liew-Littorin, Yasuhito Nannya, Sofia Bengtzén, Bénédicte Piauger, Stefan Deneberg, Martin Jädersten, Vladimir Lazarević, Jörg Cammenga, Anna Robelius, Lovisa Wennström, Emma Ölander, Senji Kasahara, Nobuhiro Hiramoto, Nobuhiro Kanemura, , Seishi Ogawa

This study identifies 16 AML subgroups based on chromatin accessibility profiles using ATAC-seq in 1,563 cases, revealing epigenetic heterogeneity and its clinical and therapeutic implications.

bioRxiv · May 24, 2026 · PreprintCancer Biology

LCP1 Regulates Cell Motility in Chondrosarcoma and Correlates with Metastatic Potential and Poor Patient Outcomes

C. A. Watson, J. T. Martin, M. Nakagawa, N. Guardino, T. Zou, E. Peairs, A. Krez, P. Nadesan, Z. Huang, J. Ou, J. Somarelli, B. Alman, J. D. Visgauss

This study identifies LCP1 as a driver of metastasis and poor prognosis in chondrosarcoma through gene expression analysis and in vitro experiments.

bioRxiv · Jan 31, 2023 · PreprintCancer Biology

Prospective isolation of mouse and human hematopoietic stem cells using Plexin domain containing 2

Y. Tanaka, Y. Kubota, I. Lieberam, J. L. Barlow, J. W. Bramley, C. Sakuma, T. Shibata, M. Nakagawa, Y. Kurosawa, T. Maruyama, C. J. Okumura, T. Akuta, D. G. Kent, T. M. Jessell, S. Goyama, , T. Kitamura

This study identifies PLXDC2 as a marker for isolating hematopoietic stem cells (HSCs) in both mouse and human, showing its utility in transplantation and xenograft models.

bioRxiv · Sep 27, 2021 · PreprintCell Biology

Changes in ATP sulfurylase activityin response to altered cyanobacteria growth conditions.

L. Gastoldi, L. M. Ward, M. Nakagawa, M. Giordano, S. E. McGlynn

The paper examines changes in ATP sulfurylase activity in two cyanobacterial strains under different growth conditions and finds a decrease in enzyme activity not linked to growth rate.

bioRxiv · Nov 11, 2020Physiology

Expansion of Human Papillomavirus-Specific T Cells in Periphery and Cervix in a Therapeutic Vaccine Recipient Whose Cervical High-Grade Squamous Intraepithelial Lesion Regressed

T. Shibata, S. Shah, T. Evans, H. N. Coleman, B. J. Lieblong, H. J. Spencer, C. M. Quick, T. Sasagawa, O. W. Stephens, E. Peterson, D. Johann, Y.-C. Lu, M. Nakagawa

The paper tracks expansion of HPV-specific T cells in blood and cervix after a therapeutic vaccine, using bulk and single-cell sequencing.

bioRxiv · Nov 7, 2020Immunology

Combined impact of pesticides and other environmental stressors on taxonomic richness of freshwater animals in irrigation ponds

H. Ito, H. Shiraishi, M. Nakagawa, N. Takamura

The paper assesses how pesticides and environmental stressors affect taxonomic richness in freshwater animals in irrigation ponds, identifying specific stressors and their interactions.

bioRxiv · Jan 30, 2020Ecology

Evaluation of DNA extraction protocols from liquid-based cytology specimens for studying cervical microbiota

T. Shibata, M. Nakagawa, H. N. Coleman, S. M. Owens, W. W. Greenfield, T. Sasagawa, M. S. Robeson

This study evaluates DNA extraction protocols from liquid-based cytology specimens to assess their ability to capture cervical microbiota diversity, finding that all protocols provided equivalent accessibility with significant individual variation over storage.

bioRxiv · Jan 27, 2020Microbiology

Geochemical and metagenomic characterization of Jinata Onsen, a Proterozoic-analog hot spring, reveals novel microbial diversity including iron-tolerant phototrophs and thermophilic lithotrophs

L. M. Ward, A. Idei, M. Nakagawa, Y. Ueno, W. W. Fischer, S. E. McGlynn

The paper characterizes the geochemistry and microbial communities of Jinata Onsen, revealing novel microbial diversity and insights into Proterozoic-like ecosystems.

bioRxiv · Mar 27, 2019Microbiology