Author

Matthew Madany

University of California San Diego

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Neuroscience· 4

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:deep learning· 2 Assay:electronic health records· 2 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Mark H. EllismaniD· 4 shared Daniela BoassaiD· 2 shared Eric A. BushongiD· 2 shared Matthias Georg HaberliD· 2 shared Adrian Borchardt· 1 shared Andrew S. MendiolaiD· 1 shared Anke Meyer‐Franke· 1 shared Ayushi AgrawaliD· 1 shared

Activity by Year

2020-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersNeuroscience

Mark H. EllismanORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Resilience to neuronal hyperactivity and restoration of the neuroimmune interactome by blocking fibrin-induced microglia activation in Alzheimers disease

Zhaoqi Yan, Andrew S. Mendiola, Kelli Lauderdale, Keun-Young Kim, Yu Yong, Kun Leng, Eric A. Bushong, Renaud Schuck, Anke Meyer‐Franke, Ayushi Agrawal, Michela Traglia, Natalie Gill, Reuben Thomas, Jonah N. Keller, Nikolaos Karvelas, , Katerina Akassoglou

This study shows that blocking fibrin-induced microglia activation reduces neuronal hyperactivity and restores the neuroimmune interactome in Alzheimer's disease.

bioRxiv · Jun 26, 2026 · PreprintNeuroscience

Systematic morphological and morphometric analysis of identified olfactory receptor neurons in Drosophila melanogaster

Cesar Nava Gonzales, Quintyn McKaughan, Eric A. Bushong, Kalyani Cauwenberghs, Renny Ng, Matthew Madany, Mark H. Ellisman, Chih-Ying Su

The paper systematically analyzes the morphology and morphometry of Drosophila olfactory receptor neurons using electron microscopy, revealing novel features and providing a dataset for future studies.

eLife · Aug 23, 2021Peer-reviewedNeuroscience

A genetic probe for visualizing glutamatergic synapses and vesicles by 3D electron microscopy

Thomas Steinkellner, Matthew Madany, Matthias Georg Haberl, Vivien Zell, Carolina Li, Junru Hu, Mason R. Mackey, Ranjan Ramachandra, Stephen Adams, Mark H. Ellisman, Thomas S. Hnasko, Daniela Boassa

The paper develops a genetic probe to label and image glutamatergic synaptic vesicles using 3D electron microscopy and deep learning.

ACS Chemical Neuroscience · Feb 1, 2021Peer-reviewedNeuroscience

CDeep3M-Preview: Online segmentation using the deep neural network model zoo

Matthias Georg Haberl, Willy Wong, Sean Penticoff, Jihyeon Je, Matthew Madany, Adrian Borchardt, Daniela Boassa, Steven T. Peltier, Mark H. Ellisman

CDeep3M-Preview allows users to test pre-trained neural networks on their data or public datasets via an online tool to improve reproducibility and biological insights.

bioRxiv · Mar 26, 2020 · PreprintNeuroscience