Author

Matthew Nichols

Howard Hughes Medical Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Neuroscience· 4

Signature Assays, Organisms & Methods

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Organism:Drosophila· 4 Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Research Focus:database / resource· 2 Approach:deep learning· 2 Assay:imaging· 2 Research Focus:clustering· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Davi D. BockiD· 3 shared Eric PerlmaniD· 3 shared Feng LiiD· 3 shared Gregory S.X.E. JefferisiD· 3 shared Zhihao ZhengiD· 3 shared Corey B. Fisher· 2 shared Eric T. TrautmaniD· 2 shared Iqbal J. Ali· 2 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersNeuroscience

Davi D. BockORCID

Mutual co-authors in cluster

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4 papers

Recent·Most cited

A Connectome of the Male Drosophila Ventral Nerve Cord

Shin-ya Takemura, Kenneth J. Hayworth, Gary B. Huang, Michał Januszewski, Zhiyuan Lu, Elizabeth C. Marin, Stephan Preibisch, C. Shan Xu, John Bogovic, Andrew S Champion, Han SJ Cheong, Marta Costa, Katharina Eichler, William T. Katz, Christopher J. Knecht, , Stuart Berg

Roughly 23 thousand traced neurons and 10 million TBars of the male Drosophila nerve cord, reconstructed from electron microscopy, typed, and queryable in neuPrint down to motor neurons.

bioRxiv · Jun 5, 2023 · PreprintNeuroscience✦ In-depth digest

Structured sampling of olfactory input by the fly mushroom body

Zhihao Zheng, Feng Li, Corey B. Fisher, Iqbal J. Ali, Nadiya Sharifi, Steven A. Calle-Schuler, Joseph Hsu, Najla Masoodpanah, Lucia Kmecová, Tom Kazimiers, Eric Perlman, Matthew Nichols, Peter H. Li, Viren Jain, Davi D. Bock

The paper maps PN-to-KC connections in Drosophila MB using EM and shows connectivity biases that enhance discrimination of food-related odor combinations.

Current Biology · Jul 6, 2022Peer-reviewedNeuroscience

Automated Reconstruction of a Serial-Section EM Drosophila Brain with Flood-Filling Networks and Local Realignment

Peter H. Li, Larry F. Lindsey, Michał Januszewski, Zhihao Zheng, Alexander Shakeel Bates, István Taisz, Mike Tyka, Matthew Nichols, Feng Li, Eric Perlman, Jeremy Maitin-Shepard, Tim M. Blakely, Laramie Leavitt, Gregory S.X.E. Jefferis, Davi D. Bock, Viren Jain

Flood-filling networks with local section realignment segment a forty-teravoxel whole-brain Drosophila electron microscopy volume, making circuit reconstruction an order of magnitude faster than manual tracing.

bioRxiv · Oct 7, 2020 · PreprintNeuroscience

A Complete Electron Microscopy Volume Of The Brain Of Adult Drosophila melanogaster

Zhihao Zheng, J. Scott Lauritzen, Eric Perlman, Camenzind G. Robinson, Matthew Nichols, Daniel Edward Milkie, Omar Torrens, John Price, Corey B. Fisher, Nadiya Sharifi, Steven A. Calle-Schuler, Lucia Kmecová, Iqbal J. Ali, Bill Karsh, Eric T. Trautman, , Davi D. Bock

The paper provides a complete electron microscopy volume of the adult Drosophila melanogaster brain, revealing new insights into synaptic connectivity and neuronal circuitry.

Cell · Jul 1, 2018Peer-reviewedNeuroscience