Author

Larry F. Lindsey

Google (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Neuroscience· 3 Bioinformatics· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 5 Research Focus:clustering· 4 Approach:statistical model· 4 Approach:deep learning· 3 Organism:Drosophila· 3 Approach:experimental assay· 3 Assay:imaging· 3 Research Focus:database / resource· 2

Frequent Co-Authors

Jeremy Maitin-ShepardiD· 4 shared Michał JanuszewskiiD· 4 shared Peter H. LiiD· 4 shared Tim M. BlakelyiD· 4 shared Feng LiiD· 3 shared Laramie LeavittiD· 3 shared Alanna LohffiD· 2 shared Alexander Shakeel BatesiD· 2 shared

Activity by Year

2018-2025 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersNeuroscience

Jeremy Maitin-ShepardORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

PyReconstruct: A fully opensource, collaborative successor to Reconstruct

Michael A. Chirillo, Julian N. Falco, Michael D. Musslewhite, Larry F. Lindsey, Kristen M. Harris

PyReconstruct is a new open-source annotation tool designed for volume electron microscopy, offering improved features for segmentation, curation, and data management across multiple disciplines.

bioRxiv · Apr 21, 2025 · PreprintCell Biology

Automated Reconstruction of a Serial-Section EM Drosophila Brain with Flood-Filling Networks and Local Realignment

Peter H. Li, Larry F. Lindsey, Michał Januszewski, Zhihao Zheng, Alexander Shakeel Bates, István Taisz, Mike Tyka, Matthew Nichols, Feng Li, Eric Perlman, Jeremy Maitin-Shepard, Tim M. Blakely, Laramie Leavitt, Gregory S.X.E. Jefferis, Davi D. Bock, Viren Jain

Flood-filling networks with local section realignment segment a forty-teravoxel whole-brain Drosophila electron microscopy volume, making circuit reconstruction an order of magnitude faster than manual tracing.

bioRxiv · Oct 7, 2020 · PreprintNeuroscience

A Connectome and Analysis of the Adult Drosophila Central Brain

Louis K. Scheffer, C. Shan Xu, Michał Januszewski, Zhiyuan Lu, Shin-ya Takemura, Kenneth J. Hayworth, Gary B. Huang, Kazunori Shinomiya, Jeremy Maitin-Shepard, Stuart Berg, Jody Clements, Philip M. Hubbard, William T. Katz, Lowell A. Umayam, Ting Zhao, , Gregory S.X.E. Jefferis

The paper presents a detailed connectome of the adult Drosophila central brain, including new methods for data analysis and biological insights into neural circuit organization.

eLife · Sep 3, 2020Peer-reviewedBioinformatics

A Connectome of the Adult Drosophila Central Brain

C. Shan Xu, Michał Januszewski, Zhiyuan Lu, Shin-ya Takemura, Kenneth J. Hayworth, Gary B. Huang, Kazunori Shinomiya, Jeremy Maitin-Shepard, David Ackerman, Stuart Berg, Tim M. Blakely, John Bogovic, Jody Clements, Tom Dolafi, Philip M. Hubbard, , Ian A. Meinertzhagen

A dense electron-microscopy reconstruction of half the fly central brain, with nearly every cell typed and queryable online, turns months of tracing partners into a database lookup.

bioRxiv · Jan 21, 2020 · PreprintNeuroscience✦ In-depth digest

High-Precision Automated Reconstruction of Neurons with Flood-filling Networks

Michał Januszewski, Joergen M. R. Kornfeld, Peter H. Li, Art Pope, Tim M. Blakely, Larry F. Lindsey, Jeremy Maitin-Shepard, Mike Tyka, Winfried T. Denk, Viren Jain

This paper introduces flood-filling networks for automated neuron reconstruction, achieving high precision in tracing neurites from electron microscopy data.

Nature Methods · Jul 11, 2018Peer-reviewedNeuroscience