Author

S. K. Chothe

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Biophysics· 1

Signature Assays, Organisms & Methods

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Research Focus:host-pathogen & immune response· 3 Organism:chicken / avian· 2 Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1 Organism:non-human primate· 1

Frequent Co-Authors

R. H. Nissly· 3 shared S. V. Kuchipudi· 3 shared A. Gontu· 2 shared P. Jakka· 2 shared S. Ramasamy· 2 shared C. Chen· 1 shared C. D. Maranas· 1 shared G. L. Bhushan· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersMicrobiology

R. H. Nissly

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Comparative analysis of serological assays and sero-surveillance for SARS-CoV-2 exposure in US cattle

S. Ramasamy, M. Qureshi, S. Mukherjee, S. Mahajan, L. C. LaBella, S. K. Chothe, P. Jakka, A. Gontu, S. Misra, M. Surendiran-Nair, R. H. Nissly, S. V. Kuchipudi

This study evaluates serological assays for SARS-CoV-2 in US cattle, finding no evidence of natural infection or transmission and highlighting issues with false positives in neutralization assays.

bioRxiv · Apr 3, 2024 · PreprintMicrobiology

A CNN model for predicting binding affinity changes between SARS-CoV-2 spike RBD variants and ACE2 homologues

C. Chen, V. S. Boorla, R. Chowdhury, R. H. Nissly, A. Gontu, S. K. Chothe, L. LaBella, P. Jakka, S. Ramasamy, K. J. Vandegrift, M. Surendran Nair, S. V. Kuchipudi, C. D. Maranas

The paper introduces a CNN model to predict RBD-hACE2 binding affinity changes for SARS-CoV-2 variants, achieving high accuracy and identifying variants with improved binding affinity.

bioRxiv · Mar 22, 2022 · PreprintBiophysics

Influenza C and D viral load in cattle correlates with bovine respiratory disease (BRD): Emerging role of orthomyxoviruses in the pathogenesis of BRD

R. H. Nissly, N. Zaman, P. A. S. Ibrahim, K. McDaniel, L. Lim, J. N. Kiser, I. M. Bird, S. K. Chothe, G. L. Bhushan, K. Vandegrift, H. L. Neibergs, S. V. Kuchipudi

This study investigates the association between influenza C and D viral loads and bovine respiratory disease in cattle, finding higher viral loads and coinfections in BRD-symptomatic animals.

Virology · Dec 1, 2020Peer-reviewedMicrobiology