Author

V. Gopalakrishnan

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioengineering· 2 Cancer Biology· 2 Biophysics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 3 Organism:human· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Approach:deep learning· 1 Organism:E. coli· 1

Frequent Co-Authors

N. Gordon· 3 shared D. D. Truong· 2 shared J. Swaminathan· 2 shared N. C. Daw· 2 shared S.-E. Lamhamedi-Cherradi· 2 shared A. G. Mikos· 1 shared A. Gibson· 1 shared A. J. Lazar· 1 shared

Activity by Year

2022-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersCancer Biology

N. Gordon

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Time-Domain Diffuse Optical Tomography for Precision Neuroscience

Y. Chekin, D. Decker, H. Dehghani, J. Dubois, R. M. Field, V. Gopalakrishnan, E. M. Koch, G. Lerner, Z. M. Aghajan, N. Miller, I. Olvera, M. J. Patel, K. L. Perdue, J. Schmidt, V. Szczepanski

This paper presents a whole-head time-domain diffuse optical tomography (TD-DOT) system, characterizes its performance, and demonstrates its ability to retrieve cortical activation maps during various tasks.

bioRxiv · Apr 30, 2024Bioengineering

Labeling Natural Killer cells with superparamagnetic iron oxide nanoparticles for detection by preclinical and clinical-scale magnetic particle imaging

O. C. Sehl, Y. Yang, A. R. Anjier, D. Nevozhay, D. Cheng, K. Guo, B. Fellows, A. R. Mohtasebzadeh, E. E. Mason, T. Sanders, P. Kim, D. Trease, D. Koul, P. W. Goodwill, K. Sokolov, , V. Gopalakrishnan

This study labels NK cells with iron oxide nanoparticles and demonstrates their detection using magnetic particle imaging in preclinical and clinical settings.

bioRxiv · Mar 8, 2024Biophysics

Mapping the Single-cell Differentiation Landscape of Osteosarcoma

D. D. Truong, C. Weistuch, K. A. Murgas, P. Admane, B. L. King, J. Chauviere Lee, S.-E. Lamhamedi-Cherradi, J. Swaminathan, N. C. Daw, N. Gordon, V. Gopalakrishnan, R. G. Gorlick, N. Somaiah, J. O. Deasy, A. G. Mikos, , J. Ludwig

The paper maps the differentiation landscape of osteosarcoma using single-cell data to identify gene modules linked to cell fate and patient survival.

bioRxiv · Sep 13, 2023Cancer Biology

A low-cost, open-source evolutionary bioreactor and its educational use

V. Gopalakrishnan, D. Crozier, K. Card, L. Chick, N. P. Krishnan, E. McClure, J. Pelesko, D. F. K. Williamson, D. Nichol, S. Mandal, R. A. Bonomo, J. G. Scott

The paper introduces a low-cost, open-source morbidostat for educational use, validated through bacterial resistance experiments and student engagement.

bioRxiv · Sep 1, 2022Bioengineering

Dissociation protocols used for sarcoma tissues bias the transcriptome observed in single-cell and single-nucleus RNA sequencing

D. D. Truong, S.-E. Lamhamedi-Cherradi, R. W. Porter, S. Krishnan, J. Swaminathan, A. Gibson, A. J. Lazar, J. A. Livingston, V. Gopalakrishnan, N. Gordon, N. C. Daw, R. Gorlick, J. A. Ludwig

The paper shows that dissociation methods bias transcriptomes in sarcoma single-cell and single-nucleus RNA-seq, and demonstrates computational correction of these biases.

bioRxiv · Jan 21, 2022 · PreprintCancer Biology