Author

Y. Kumagai

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Biophysics· 1 Microbiology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Research Focus:cell type annotation· 2 Research Focus:cell signaling & trafficking· 1 Assay:electronic health records· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Assay:imaging· 1 Assay:metagenomics· 1

Frequent Co-Authors

C.-C. Yang· 1 shared D. Ishikuro· 1 shared E. Kato· 1 shared G. Devitt· 1 shared H. Fukuda· 1 shared H. Hamada· 1 shared H. Takeshima· 1 shared H. Yamada· 1 shared

Activity by Year

2017-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 8 mutual co-author links

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1 shared paperMicrobiology

C.-C. Yang

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Growth inhibitory factor/metallothionein-3 is a sulfane sulfur-binding protein

Y. Shinkai, Y. Ding, T. Matsui, G. Devitt, M. Akiyama, T.-L. Shen, M. Nishida, T. Ida, T. Akaike, S. Mahajan, J. M. Fukuto, Y. Shigeta, Y. Kumagai

The paper identifies GIF/metallothionein-3 as a sulfane sulfur-binding protein that regulates zinc ion binding and release through a unique C-S-S-Zn structure.

bioRxiv · Oct 19, 2023Biochemistry

Probe capture enrichment sequencing of amoA genes discloses diverse ammonia-oxidizing archaeal and bacterial populations

S. Hiraoka, M. Ijichi, H. Takeshima, Y. Kumagai, C.-C. Yang, Y. Makabe-Kobayashi, H. Fukuda, S. Yoshizawa, W. Iwasaki, K. Kogure, T. Shiozaki

This study develops a probe capture enrichment method for amoA genes, revealing more accurate and diverse ammonia-oxidizing archaeal and bacterial populations than traditional sequencing approaches.

bioRxiv · Apr 10, 2023 · PreprintMicrobiology

In planta genome editing with CRISPR/Cas9 ribonucleoproteins

Y. Kumagai, Y. Liu, H. Hamada, W. Luo, J. Zhu, M. Kuroki, Y. Nagira, N. Taoka, E. Kato, R. Imai

This study uses CRISPR/Cas9 ribonucleoproteins delivered via particle bombardment to edit the wheat genome, resulting in a 10% reduction in culm length without yield loss.

bioRxiv · Jun 24, 2021Plant Biology

Dynamic clustering of dynamin-amphiphysin rings regulates membrane constriction and fission coupled with GTP hydrolysis

T. Takeda, T. Kozai, H. Yang, D. Ishikuro, K. Seyama, Y. Kumagai, T. Abe, H. Yamada, T. Uchihashi, T. Ando, K. Takei

This study uses EM and HS-AFM to show dynamin-amphiphysin rings cluster during GTP hydrolysis, driving membrane constriction and fission through a novel clusterase mechanism.

bioRxiv · Aug 20, 2017Biophysics