Author
Y. Park
University at Buffalo, State University of New York
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2016-2025 · peak 15/yrCo-Author Collaboration Network
10 top collaborators · 29 mutual co-author links69 papers
Recent·Most cited
- Cancer BiologybioRxiv
CXCL8/CXCR2 signaling mediates bone marrow fibrosis and represents a therapeutic target in myelofibrosis
A. Dunbar, D. Kim, M. Lu…·R. Hoffman
This study identifies CXCL8/CXCR2 signaling as a driver of bone marrow fibrosis in myelofibrosis and shows its therapeutic potential through genetic and pharmacologic inhibition.
DOI 10.1182/blood.2022015418 - Cancer BiologybioRxivPreprint
Loss of KRASG12D feedback regulation involving splicing factor SRSF1 accelerates pancreatic cancer
L. Wan, K.-T. Lin, M. A. Rahman…·A. R. Krainer
The paper shows that loss of SRSF1, a splicing factor, accelerates pancreatic cancer by disrupting homeostasis and enhancing KrasG12D-driven tumorigenesis.
DOI 10.1101/2021.10.13.464210 - MicrobiologybioRxiv
Rapid label-free identification of pathogenic bacteria species from a minute quantity 1 exploiting three-dimensional quantitative phase imaging and artificial neural network
G. Kim, D. Ahn, M. Kang…·Y. Park
This paper develops a framework for rapid bacterial species identification using 3D quantitative phase imaging and artificial neural networks, achieving 99.9% accuracy with single colony-forming units.
DOI 10.1038/s41377-022-00881-x - Cell BiologybioRxivPreprint
Label-free three-dimensional analyses of live cells with deep-learning-based segmentation exploiting refractive index distributions
J. Choi, H.-J. Kim, G. Sim…·Y. Park
The paper develops a label-free 3D segmentation method using deep learning to analyze live cells and their organelles without exogenous labels.
DOI 10.1101/2021.05.23.445351 - BioengineeringbioRxiv
Reagent- and actuator-free analysis of individual erythrocytes using three-dimensional quantitative phase imaging and capillary microfluidics
D. Ryu, H. Nam, J. S. Jeon, Y. Park
This paper presents a method to analyze individual erythrocytes without reagents or actuators using microfluidics and quantitative phase imaging to measure morphological and biochemical properties.
- Cancer BiologybioRxivPreprint
Visualizing cancer-originated acetate uptake through MCT1 in reactive astrocytes demarcates tumor border and extends survival in glioblastoma patients
H. Y. Ko, J.-I. Chung, D. Kim…·M. Yun
This study uses AcePET to visualize tumor boundaries and reactive astrocytes in GBM, showing that targeting MCT1 improves survival by enabling complete resection of cancer stem cells.
- BioengineeringLab on a ChipPeer-reviewed
Label-free three-dimensional observations and quantitative characterisation of on-chip vasculogenesis using optical diffraction tomography
C. Lee, S. Kim, H. Hugonnet…·Y. Park
The paper uses optical diffraction tomography to image and analyze 3D vasculogenesis in vitro without exogenous labeling.
DOI 10.1039/d0lc01061h - BioengineeringbioRxiv
Label-free bone marrow white blood cell classification using refractive index tomograms and deep learning
D. Ryu, J. Kim, D. Lim…·Y. Park
This paper presents a label-free method for classifying bone marrow white blood cells using 3D refractive index tomograms and deep learning, achieving high accuracy in subtype classification.
- MicrobiologybioRxiv
The SARS-CoV-2 RNA interactome
S. Lee, Y.-s. Lee, Y. Choi…·V. N. Kim
This study identifies 109 host factors interacting with SARS-CoV-2 RNA and reveals their roles in antiviral or proviral functions through RNP capture and knockdown experiments.
DOI 10.1016/j.molcel.2021.04.022 - BiophysicsThe Journal of Physical Chemistry BPeer-reviewed
Curvature effect of PE-included membrane on the behavior of cinnamycin on the membrane
S.-R. Lee, Y. Park, J.-W. Park
The paper studies how the curvature of a PE-containing membrane affects cinnamycin adhesion, finding a linear correlation between curvature and adhesion strength.
DOI 10.1021/acs.jpcb.0c06029 - BioengineeringbioRxiv
Data-driven multiplexed microtomography of endogenous subcellular dynamics
Y. Jo, H. Cho, W. S. Park…·Y. Park
This paper introduces a data-driven method for multiplexed microtomography using refractive index imaging to study endogenous subcellular dynamics without exogenous labels.
DOI 10.1038/s41556-021-00802-x - Cancer BiologybioRxivPreprint
Oncogenic KRAS engages an RSK1/NF1 complex in pancreatic cancer
D. K. Cheng, T. E. Oni, Y. Park…·D. A. Tuveson
This study identifies RSK1 as a KRASG12D-specific interactor in PDAC and shows RSK1 mediates negative feedback on wild-type KRAS.
DOI 10.1101/2020.09.14.295394 - BiophysicsbioRxiv
Three-Dimensional Label-Free Imaging and Quantification of Migrating Cells during Wound Healing
A. J. Lee, H. Hugonnet, W. Park, Y. Park
This paper introduces a label-free 3D imaging method for wound healing assays, enabling quantitative analysis of cell migration dynamics without exogenous labels.
DOI 10.1364/boe.405087 - PathologybioRxiv
Multiscale label-free volumetric holographic histopathology of thick-tissue slides with subcellular resolution
H. Hugonnet, Y. W. Kim, M. Lee…·Y. Park
This paper introduces a label-free volumetric imaging technique for thick-tissue slides with subcellular resolution, demonstrating its ability to visualize various tumor types and pathologies.
DOI 10.1117/1.ap.3.2.026004 - BioengineeringbioRxiv
Laser-activated drug implant for controlled release to the posterior segment of the eye
X. He, Z. Yuan, S. Gaeke…·Y. Park
This paper develops a laser-activated drug implant for controlled release in the posterior eye, showing in vitro and in vivo drug release kinetics and safety.
DOI 10.1021/acsabm.0c01334 - Cancer BiologybioRxiv
S100A8/A9 mediate the reprograming of normal mammary epithelial cells induced by dynamic cell-cell interactions with adjacent breast cancer cells.
S. H. Jo, W. H. Heo, M. Quan…·H.-G. Moon
This study shows that S100A8/A9 mediates the reprogramming of normal mammary epithelial cells by dynamic interactions with breast cancer cells, leading to epithelial-mesenchymal transition and altered cellular behaviors.
DOI 10.1038/s41598-020-80625-2 - MicrobiologyBiomedical Optics ExpressPeer-reviewed
Three-dimensional label-free observation of individual bacteria upon antibiotic treatment using optical diffraction tomography
j. oh, J. S. Ryu, M. Lee…·Y. Park
This study uses optical diffraction tomography to observe 3D changes in individual bacteria under antibiotic treatment, quantifying their responses to ampicillin.
- BiophysicsbioRxivPreprint
Measurements of 3-D morphology of individual red blood cells upon localized photothermal effects using gold nanorods
C. Song, G.-H. Lee, J. Oh…·Y. Park
This study measures 3-D morphology changes in human red blood cells under localized photothermal effects using gold nanorods and 3D quantitative phase imaging.
- MicrobiologybioRxivPreprint
Rapid antimicrobial susceptibility test using spatiotemporal analysis of laser speckle dynamics of bacterial colonies
S. Han, H. No, Y. Baek…·Y. Park
This paper introduces a rapid antimicrobial susceptibility test using laser speckle dynamics to detect bacterial growth in 2-4.5 hours.
DOI 10.1101/853168 - BioengineeringbioRxivPreprint
Measuring three-dimensional dynamics of platelet activation using 3-D quantitative phase imaging
This paper uses 3-D quantitative phase imaging to study platelet activation dynamics, finding that thrombin and TRAP stimulation leads to lower cellular concentration and dry mass compared to resting platelets.
- Cancer BiologybioRxiv
The MEK1/2 pathway as a therapeutic target in high-grade serous ovarian carcinoma
M. Chesnokov, I. Khan, Y. Park…·I. Chefetz Menaker
This study investigates MEK1/2 pathway activity in high-grade serous ovarian carcinoma and shows that its inhibition reduces tumor growth but promotes stem-like properties, suggesting potential resistance mechanisms.
DOI 10.3390/cancers13061369 - BiochemistrybioRxivPreprint
A revised 1.6 Å structure of the GTPase domain of the Parkinson’s disease-associated protein LRRK2 provides insights into mechanisms
C.-X. Wu, J. Liao, Y. Park…·Q. Q. Hoang
This paper reports a 1.6 Å crystal structure of the GTPase domain of LRRK2, revealing how PD-associated mutations at Arg-1441 impair nucleotide-dependent conformational dynamics.
DOI 10.1101/676627 - ImmunologybioRxivPreprint
DeepIS: deep learning framework for three-dimensional label-free tracking of immunological synapses
M. Lee, Y.-H. Lee, J. Song…·Y. Park
This paper introduces a deep learning framework for 3D label-free tracking of immunological synapses using optical diffraction tomography and segmentation.
DOI 10.1101/539858 - BiophysicsbioRxiv
Deep-learning-based label-free segmentation of cell nuclei in time-lapse refractive index tomograms
J. Lee, H. Kim, H. Cho…·S.-J. Ye
This paper introduces a deep learning method for label-free cell nucleus segmentation in time-lapse refractive index tomograms, validated across multiple experiments.
DOI 10.1109/access.2019.2924255 - BiochemistrybioRxiv
A new family of neural wiring receptors across bilaterians defined by phylogenetic, biochemical and structural evidence
S. Cheng, Y. Park, J. D. Kurleto…·E. Özkan
The paper identifies Dprs and DIPs as part of an ancient bilaterian receptor family involved in neural wiring, supported by phylogenetic, biochemical, and structural evidence.
DOI 10.1073/pnas.1818631116 - BiophysicsbioRxiv
Learning-based screening of hematologic disorders using quantitative phase imaging of individual red blood cells
G. Kim, Y. Jo, H. Cho…·Y. Park
This paper develops a label-free method using quantitative phase imaging and machine learning to screen for hematologic disorders with high accuracy.
- PhysiologybioRxiv
Impact of Chronic Total Occlusion Lesion Length onSix-month Angiographic and 2-year Clinical Outcomes
J. Ahn, S.-W. Rha, B. Choi…·H. Yu
This study compares 6-month angiographic and 2-year clinical outcomes between long and short chronic total occlusion (CTO) lesions after successful DES PCI, finding higher repeat PCI rates in long CTO lesions.
DOI 10.1371/journal.pone.0198571 - BioengineeringbioRxiv
Label-free non-invasive quantitative measurement of lipid contents in individual microalgal cells using refractive index tomography
J. Jung, S.-J. Hong, H.-B. Kim…·Y. Park
This paper quantifies lipid content in individual microalgal cells using refractive index tomography without chemical extraction.
DOI 10.1038/s41598-018-24393-0 - BiophysicsbioRxiv
Measurements of three-dimensional refractive index tomography and membrane deformability of live erythrocytes from Pelophylax nigromaculatus
G. Kim, M. Lee, S. Youn…·Y. Park
This study measures 3D refractive index and membrane properties of live erythrocytes from Pelophylax nigromaculatus to compare interspecific differences with mammals.