Jingyi Ren

Subcellularly Resolved 3D Translatome in Mouse Oocytes and Early Embryos

The paper profiles the subcellularly resolved 3D translatome in mouse oocytes and early embryos, revealing spatially controlled translation patterns and embryo asymmetry.

Spatial Atlas of the Mouse Central Nervous System at Molecular Resolution

The paper creates a high-resolution spatial atlas of the mouse CNS by combining in situ sequencing with scRNA-seq data to map cell types and gene expression across the brain and spinal cord.

Spatially Resolved Single-cell Translatomics at Molecular Resolution

The paper introduces RIBOmap, a 3D in situ method to profile mRNA translation at single-cell and spatial resolutions, revealing translation dependencies on cell cycle and subcellular localization in brain tissue.

Spatiotemporally resolved transcriptomics reveals subcellular RNA kinetic landscape

This paper introduces TEMPOmap, a method to profile subcellular RNA kinetics in single cells, revealing kinetic gene clusters with distinct functional roles.

Integrative in situ mapping of single-cell transcriptional states and tissue histopathology in an Alzheimer's disease model

The paper introduces STARmap PLUS to map single-cell transcriptional states and disease markers in AD mouse models, revealing spatial relationships between cell types and pathological features.

ClusterMap: multi-scale clustering analysis of spatial gene expression

ClusterMap is a framework for analyzing spatial gene expression data, clustering RNAs into subcellular structures and tissue regions across multiple dimensions.