Anna Biernacka

Benchmarking five extracellular vesicle proteomics workflows, including low-input Exo-insert and Exo-SP3, for deep mass spectrometry profiling

The paper benchmarks five proteomics workflows for sEV analysis, showing Exo-insert and Exo-SP3 can identify ~1100 proteins from low-input samples, with performance varying by sEV source.

qDSB-Seq: quantitative DNA double-strand break sequencing

qDSB-Seq quantifies absolute DNA double-strand break frequencies and their genomic coordinates across samples and organisms.

Integrated analysis of patterns of DNA breaks reveals break formation mechanisms and their population distribution during replication stress

Inferring proteome dynamics during yeast cell cycle using gene expression data

The paper estimates genome-wide protein abundances and dynamics from gene expression data without assuming steady-state conditions, validated using yeast cell cycle data.