Author

Tom R Thomas

Centre for Human GeneticsORCID 0000-0002-2188-3784Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Immunology· 2 Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 3 Organism:human· 2 Assay:proteomics· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1

Frequent Co-Authors

Calliope Athena DendrouiD· 2 shared Charlotte Rich‐GriffiniD· 2 shared Román FischeriD· 2 shared Abhinandan Devaprasad· 1 shared Alex D. CorwiniD· 1 shared Alexander LeithneriD· 1 shared Ananya BhallaiD· 1 shared Ashwin JainarayananiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Calliope Athena DendrouORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

An end-to-end framework for Cell DIVE multiplexed imaging and spatial immune microenvironment analysis

Ananya Bhalla, Jonas Mackerodt, Mathilde Pohin, Sarah Hill, Jean-Baptiste Richard, Tom R Thomas, Romane Henninger, Fiona Ginty, Alex D. Corwin, Elizabeth McDonough, Christine Surrette, Kim S. Midwood, Ilya Korsunsky, Christopher Dominic Buckley, Dylan Windell, Mark Christopher Coles

bioRxiv · Jun 20, 2025 · PreprintImmunology

A resource for extracellular vesicles from activated CD4 T cells that relay pro-inflammatory signals

Ashwin Jainarayanan, Ranjeet Singh Mahla, Jesusa Capera, Mirudula Elanchezhian, Dhanu Gupta, Nithishwer Mouroug Anand, Tom R Thomas, Daniel Beckers, Alexander Leithner, Sooraj R. Achar, Salvatore Valvo, Mariana Conceição, Elke Kurz, Abhinandan Devaprasad, Sakina Amin, , Michael Loran Dustin

This study characterizes extracellular vesicles from activated CD4 T cells and shows their pro-inflammatory effects on antigen-presenting cells, providing a resource for EV-based therapeutic development.

bioRxiv · Oct 15, 2024 · PreprintImmunology

Panpipes: a pipeline for multiomic single-cell and spatial transcriptomic data analysis

Fabiola Curion, Charlotte Rich‐Griffin, Devika Agarwal, Sarah Ouologuem, Tom R Thomas, Fabian Joachim Theis, Calliope Athena Dendrou

Panpipes provides computational workflows for multiomic single-cell and spatial transcriptomic analysis, enabling quality control, preprocessing, integration, clustering, and reference mapping.

bioRxiv · Mar 11, 2023 · PreprintBioinformatics

Biochemical and metabolic maladaption defines pathological niches in progressive multiple sclerosis

Melissa Grant‐Peters, Charlotte Rich‐Griffin, Hing‐Yuen Yeung, Tom R Thomas, Simon A. Davis, Mohammad Azizian Kalkhoran, Joseph Fisher, Román Fischer, Gianfelice Cinque, Calliope Athena Dendrou

The paper identifies disease-specific biochemical and metabolic signatures in progressive multiple sclerosis using multiomic profiling and spatial techniques.

bioRxiv · Sep 26, 2022 · PreprintNeuroscience