Author

John J. Karijolich

Vanderbilt UniversityORCID 0000-0002-7925-1122Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Approach:genetic perturbation / CRISPR· 1

Frequent Co-Authors

Alissa M. WeaveriD· 1 shared Azra LariiD· 1 shared Britt A. GlaunsingeriD· 1 shared Chance MeersiD· 1 shared Clark MassickiD· 1 shared Daniel W. BakiD· 1 shared Danielle L. MichelliD· 1 shared Deepanshu Singla· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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1 shared paperMolecular Biology

Alissa M. WeaverORCID

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Author profile →

3 papers

Recent·Most cited

A nitrite-responsive regulatory RNA locus sustains commensal resilience against nitrosative stress

Ryan T. Fansler, Daniel W. Bak, Madison Langford-Butler, Liang Chen, Deepanshu Singla, Luisella Spiga, Jonathan Livny, John J. Karijolich, Chance Meers, Qiangjun Zhou, Eranthie Weerapana, Wenhan Zhu

This study identifies a nitrite-responsive regulatory RNA locus in Bacteroides thetaiotaomicron that enhances resilience to nitrosative stress during intestinal inflammation.

bioRxiv · Jul 10, 2026 · PreprintMicrobiology

RNA polymerase III transcription-associated polyadenylation promotes the accumulation of noncoding retrotransposons during infection

Azra Lari, Sahil B. Shah, Xiaowen Mao, Priyanka Sanghrajka, John J. Karijolich, Liana F. Lareau, Britt A. Glaunsinger

The paper identifies polyadenylation as a mechanism driving SINE RNA accumulation during gammaherpesvirus infection, linking Pol III transcription to mRNA-like processing.

bioRxiv · May 14, 2025 · PreprintMolecular Biology

5-Fluorouracil Treatment Represses Pseudouridine-Containing Small RNA Export into Extracellular Vesicles

Sherman Qu, Hannah Nelson, Xiao Liu, Elizabeth M. Semler, Danielle L. Michell, Clark Massick, Jeffrey L. Franklin, John J. Karijolich, Alissa M. Weaver, Robert J. Coffey, Qi Liu, Kasey C. Vickers, James G. Patton

This study shows that 5-FU treatment alters the export and base modifications of small RNAs in extracellular vesicles from colorectal cancer cells.

bioRxiv · Jan 15, 2024 · PreprintMolecular Biology