Author

Benjamin David Hopkins

Icahn School of Medicine at Mount SinaiORCID 0000-0002-7970-6430Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Immunology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Research Focus:cancer & tumor microenvironment· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:drug response / drug discovery· 1 Assay:flow cytometry· 1

Frequent Co-Authors

Akio YamashitaiD· 1 shared Alexander Kerelsky· 1 shared Alexander M. TsankoviD· 1 shared Alexandre MaucueriD· 1 shared Alexei DegtereviD· 1 shared Alexey G. Ryazanov· 1 shared Amir HorowitziD· 1 shared Amit RegeviD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperSystems Biology

Akio YamashitaORCID

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2 papers

Recent·Most cited

Organoid-T cell co-cultures functionally stratify tumor-reactive T cells and their responses to immune checkpoint inhibitors

Elliot Merritt, Julie-Ann Cavallo-Fleming, Genesis Lara Granados, Shalini Nath, Wooseung Lee, Ramja Sritharan, Subhasree Sridhar, Laura Zuluaga, Edgardo V. Ariztia, Fred R. Hirsch, Martin J. Walsh, John P. Sfakianos, Ketan K. Badani, Rachel Brody, Amir Horowitz, , Anna S. Tocheva

bioRxiv · May 31, 2026 · PreprintImmunology

A global atlas of substrate specificities for the human serine/threonine kinome

Jared Lee Johnson, Tomer M. Yaron, Emily M. Huntsman, Alexander Kerelsky, Junho Song, Amit Regev, Ting-Yu Lin, Katarina M. Liberatore, Daniel M. Cizin, Benjamin M. Cohen, Neil Vasan, Yilun Ma, Konstantin Krismer, Jaylissa Torres Robles, Bert van de Kooij, , Lewis C. Cantley

Positional scanning peptide arrays profile substrate sequence specificities across 303 human serine/threonine kinases, enabling computational kinase-substrate annotation and signaling pathway inference across the human phosphoproteome.

Nature · Jan 11, 2023Peer-reviewedSystems Biology✦ In-depth digest