David J. Barry

The paper uses 3D spatial transcriptomics to map the molecular organization of the mouse olfactory bulb, revealing symmetric glomeruli and asymmetric deeper layer cells.

This study reanalyzes image datasets to emphasize robust experimental design and effect sizes over statistical significance, providing open-access code to improve reproducibility.

This study generates fam83f knock-out zebrafish to investigate Fam83f's role in hatching and DNA damage response, finding impaired autophagy and increased radiation sensitivity.

This paper introduces KimmelNet, a deep learning model that predicts zebrafish embryo age from 2D brightfield images and detects developmental delay between populations.

GIANI is an open-source software for automated analysis of 3D microscopy images, enabling segmentation, morphology quantification, and protein expression analysis in various imaging contexts.