bioRxivGenomicsPreprint
Axon Guidance Signaling Modulates Epithelial to Mesenchymal Transition in Stem Cell-Derived Retinal Pigment Epithelium
Srinivas R. SripathiiD, Melissa M. LiuiD, Ming-Wen Hu, Jun WaniD, Jie ChengiD, Yukan DuaniD, Joseph L. MertziD, Karl J. WahliniD, Julien MaruottiiD, Cynthia A. BerlinickeiD, Jiang Qian, Donald J. ZackiD
Abstract
The critical role of epithelial to mesenchymal transition (EMT) in embryonic development, malignant transformation, and tumor progression has been well studied in normal and cancerous tissues and cells. Interestingly, EMT has also been reported to play a key role in the early progression of several retinal degenerative diseases, including scarring associated proliferative vitro-retinopathy (PVR), choroidal neo-vascularization induced \"wet\" age-related macular degeneration (AMD) and diabetic retinopathy (DR). Despite these studies, many questions remain unexplored regarding EMT-associated retinal pigment epithelium (RPE) degeneration and dysfunction. We hypothesize that RPE cells undergo EMT prior to cell death during the progression of atrophic \"dry\" AMD. Utilizing human stem cell-derived RPE (hRPE) as a model to study RPE EMT, we optimized two independent but complementary RPE EMT induction systems: 1) enzymatic dissociation of hRPE monolayer cultures and 2) co-treatment of hRPE monolayer cultures with transforming growth factor beta (TGF-{beta}) and the inflammatory cytokine, tumor necrosis factor alpha (TNF-). To further understand the molecular mechanisms of RPE EMT regulation, we performed an RNA-Sequencing (RNA-Seq) time course examination across 48 hours beginning with EMT induction. Our transcriptome profiling provides a comprehensive quantification of dynamic signaling events and associated biological pathways underlying RPE EMT and reveals an intriguing significance for widespread dysregulation of multiple axon guidance molecules in this process.
- organism: human
- assay: bulk RNA-seq
- research focus: differential expression
- approach: statistical model
- Citations
- 1
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Proteomic and phosphoproteomic analysis identifies novel liver-related signaling in retinal pigment epithelial cells during epithelial-mesenchymal transition
J. L. Mertz, S. R. Sripathi, … D. J. Zack·bioRxiv·Feb 17, 2020
- Transcriptome profiling of embryonic retinal pigment epithelium reprogramming
Jared A. Tangeman, Agustín Luz-Madrigal, … Katia Del Rio‐Tsonis·GenesPeer-reviewed·May 29, 2021
- Molecular profiling of retinal pigment epithelial cell differentiation for therapeutic use
Sandra Petrus-Reurer, Alex R. Lederer, … Fredrik Lanner·bioRxiv·Jan 31, 2021
- Human Amniotic Epithelial Cells Promote Chx10-/Pax6+ Muller Glia Subpopulation Reprogramming into Photoreceptor-like Cells
- Regeneration of the zebrafish retinal pigment epithelium after widespread genetic ablation
Nicholas J. Hanovice, Lyndsay L. Leach, … Jeffrey M. Gross·PLoS GeneticsPeer-reviewed·Jan 29, 2019
- Inducing Human Retinal Pigment Epithelium-like Cells from Somatic Tissue
I. N. Woogeng, I. Abugessaisa, … C. Kime·bioRxiv·Jul 27, 2020