bioRxivDevelopmental BiologyPreprint
Axial patterning of gastruloids via diverse cell type compositions
Kerim AnlaşiD, Fumio NakakiiD, Nicola GrittiiD, Jordi Font-Reverter, Krisztina AratóiD, David OriolaiD, James A. SharpeiD, Vikas TrivediiD
Abstract
The formation of the germ layers and antero-posterior (AP) axial patterning are interlinked milestones of embryogenesis. Gastruloids, in vitro models from aggregated embryonic stem cells (ESCs), permit the study and deconstruction of these events. Gastruloids are successfully generated from ESCs of variable pluripotent states, but it remains unknown how the initial conditions influence cell type composition and to what degree resulting variations in spatial patterning can converge onto an elongated body axis. To address this, we comparatively study aggregates from varying proportions of primed and naive ESCs. Despite differences in AP symmetry-breaking dynamics and distinct trajectories toward either anterior mesodermal or neuro-ectodermal fates, all conditions produce elongated gastruloids. Furthermore, timed modulation of Activin/Nodal signaling in aggregates equalizes AP polarization modes and mixing of initial ESC pluripotent states generates gastruloids with enhanced tissue type diversity. This work therefore uncovers a previously unappreciated developmental flexibility underlying mammalian AP axial patterning.
- organism: mouse
- assay: bulk RNA-seq
- research focus: cell type annotation
- research focus: clustering
- research focus: differential expression
- research focus: trajectory inference
- approach: experimental assay
- Citations
- 3
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