bioRxivGenomicsPreprint
Differential Expression of NPAS4 in the Dorsolateral Prefrontal Cortex Following Acute Opioid Intoxication
David W. SosnowskiiD, Andrew E. JaffeiD, Ran TaoiD, Amy Deep‐SoboslayiD, Joel E. KleinmaniD, Thomas M. HydeiD, Chang ShuiD, Sarven SabunciyaniD, Brion S. MaheriD
Abstract
Background and AimsThe physical, emotional, and social impacts of opioid abuse are well known; although preclinical models reveal the neurobiological pathways altered through opioid abuse, comprehensive assessments of gene expression in human brain samples are lacking. The goals of the present study were to compare gene expression in the prefrontal cortex between brain samples of individuals who died of acute opioid intoxication and group-matched controls, and to test if differential gene expression was enriched in gene sets related to opioid use. DesignCross-sectional study using human brains donated to the Lieber Institute for Brain Development. Study groups included 72 brain samples from individuals who died of acute opioid intoxication, 53 group-matched psychiatric control samples, and 28 group-matched normal control samples. SettingMaryland, USA. ParticipantsPostmortem tissue samples of the dorsolateral prefrontal cortex from 153 deceased individuals (Mage = 35.42, SD = 9.43 years; 62% male; 77% White). MeasurementsWhole transcriptome RNA sequencing was used to generate exon counts, and differential expression was tested using limma-voom. Analyses controlled for relevant sociodemographic characteristics, technical covariates, and cryptic relatedness and batch effects using quality surrogate variable analysis. Gene set enrichment analyses (GSEA) also were conducted. FindingsSixteen genes were differentially expressed (i.e., FDR-corrected p < .10) in opioid samples compared to control samples. The top differentially expressed gene, NPAS4 (FDR adjusted p = .005), was downregulated in opioid samples and has previously been implicated in cocaine use. Enrichment analyses did not provide evidence for enrichment in pathways obviously related to opioid use. ConclusionsNPAS4 is differentially expressed in the prefrontal cortex of subjects that died of an opioid overdose, providing evidence for another gene with functional relevance to opioid use and overdose.
- organism: human
- assay: bulk RNA-seq
- research focus: differential expression
- approach: statistical model
- Citations
- 2
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Repeated morphine exposure activates synaptogenesis and other neuroplasticity-related gene networks in the prefrontal cortex of male and female rats
Shirelle X. Liu, Mari S. Gades, … Jonathan C. Gewirtz·Drug and Alcohol DependencePeer-reviewed·Feb 15, 2021
- Molecular rhythm alterations in prefrontal cortex and nucleus accumbens associated with opioid use disorder
Xiangning Xue, Wei Zong, … Ryan Wellington Logan·Translational PsychiatryPeer-reviewed·Mar 26, 2022
- Neural signatures of opioid-induced risk-taking behavior in the prelimbic prefrontal cortex
Cana B. Quave, Andres M. Vasquez, … Fabricio H Do Monte·bioRxiv·Feb 5, 2024
- Transcriptional alterations in opioid use disorder reveal an interplay between neuroinflammation and synaptic remodeling
Marianne L. Seney, Sam-Moon Kim, … Ryan Wellington Logan·Biological PsychiatryPeer-reviewed·Jun 12, 2021
- Circadian rhythm disruptions associated with opioid use disorder in the synaptic proteomes of the human dorsolateral prefrontal cortex and nucleus accumbens
Stéphanie Puig, Xiangning Xue, … Ryan Wellington Logan·bioRxiv·Apr 7, 2023
- Single Nucleus Transcriptomics Reveals Pervasive Glial Activation in Opioid Overdose Cases
Julong Wei, Tova Y. Lambert, … Schahram Akbarian·bioRxiv·Mar 7, 2023