bioRxivImmunologyPreprint
Macrophages restrict tumor permissiveness to immune infiltration by controlling local collagen topography through a Tcf4-Collagen3 fibrotic axis
Zoé FusilieriD, Franck SimoniD, Isabel Calvente, Lou Crestey, Alexandra Clément, Mathilde MathieuiD, Roude Jean-Marie, Florence Piastra-Facon, Jeyani George Clément, Enola Lumineau, Mattia Tonani, Valeria Manriquez, Lívia Lacerda MarianoiD, Perrine de Villemagne, Eliane PiaggioiD, Vincent SemeteyiD, Sylvie CoscoyiD, Emanuele MartiniiD, Giorgio ScitaiD, Jean‐Christophe GellyiD, Johanna IvaskaiD, Hervé IsambertiD, Christel GoudotiD, Paolo PieroboniD, Ana‐Maria Lennon‐DuméniliD, Hélène D. MoreauiD
Abstract
During tumorigenesis, the extracellular matrix (ECM), which constitutes the structural scaffold of tissues, is profoundly remodeled. While the impact of such remodeling on tumor growth and invasion has been extensively investigated, much less is known on the consequences of ECM remodeling on tumor infiltration by immune cells. By combining tissue imaging and machine-learning, we here show that the localization of T lymphocytes and neutrophils, which orchestrate antitumor immune responses, can be predicted by defined topographical features of fibrillar collagen networks. We further show that these collagen topographies result from the activation of a fibrotic pathway controlled by the transcription factor Tcf4 upon depletion of tumor-associated macrophages at late tumor stages. This pathway promotes the deposition of collagen 3 by both tumor and stromal cells, resulting in intermingled collagen networks that favor intra-tumoral T cell and neutrophil localization. Importantly, analysis of human colorectal cancer public bulk RNAseq databases showed a strong correlation between Tcf4 and collagen 3, as well as between the expression of these genes and tumor infiltration by T lymphocytes and neutrophils, attesting the clinical relevance of our findings. This study highlights the key structural role of macrophages on the tumor extracellular matrix and identifies collagen network topographies as a major regulator of tumor infiltration by immune cells.
- organism: human
- assay: bulk RNA-seq
- research focus: cell type annotation
- research focus: spatial domain detection
- approach: machine learning (classical)
- Citations
- 4
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Collagen Density Modulates the Immunosuppressive Functions of Tumor-Associated Macrophages
A. M. H. Larsen, D. E. Kuczek, … D. H. Madsen·bioRxiv·Jun 28, 2019
- Collagen-Based Tumor Spheroid Model for Investigating Tumor-Macrophage Interactions through Extracellular Matrix Remodeling
Luna Zhang, Sanab Abdi, … David K. Wood·bioRxiv·Oct 1, 2025
- Collagen density regulates the activity of tumor-infiltrating T cells
D. E. Kuczek, A. M. Hvid Larsen, … D. H. Madsen·bioRxiv·Dec 12, 2018
- Tumor-Associated EDA-FN-Enriched Matrix Instructs Macrophage Behavior
Ghazal Bashiri, Elizabeth Bakare, … Karin Wang·Cellular and Molecular BioengineeringPeer-reviewed·Oct 26, 2026
- Collagen type I promotes pancreatic tumor growth and limits immune cell infiltration
Marie‐Louise Thorseth, Astrid Zedlitz Johansen, … Daniel Hargbøll Madsen·bioRxiv·Jan 10, 2026
- Mechano-mediated M2 macrophage polarization and immune suppression in stiffened tumor microenvironment
Jiranuwat Sapudom, Paul Sean Tipay, Jeremy C. M. Teo·bioRxiv·Jul 29, 2024