Cell ReportsDevelopmental BiologyPeer-reviewed journal article
Oct4 mediated inhibition of Lsd1 activity promotes the active and primed state of pluripotency enhancers
Lama AlAbdiiD, Debapriya SahaiD, Ming HeiD, Mohd Saleem DariD, Sagar M. UtturkariD, Putu Ayu Sudyanti, Stephen McCune, Brice H. Spears, James A. Breedlove, Nadia A. LanmaniD, Humaira GowheriD
Abstract
An aberrant increase in pluripotency gene (PpG) expression due to enhancer reactivation could induce stemness and enhance tumorigenicity of cancer stem cells. Silencing of PpG enhancers (PpGe) during embryonic stem cell differentiation involves Lsd1-mediated H3K4me1 demethylation and DNA methylation. Here, we observed retention of H3K4me1 and DNA hypomethylation at PpGe associated with a partial repression of PpGs in F9 embryonal carcinoma cells (ECCs) post-differentiation. H3K4me1 demethylation in F9 ECCs could not be rescued by Lsd1 overexpression. Given our observation that H3K4me1 demethylation is accompanied by strong Oct4 repression in P19 ECCs, we tested if Oct4 interaction with Lsd1 affects its catalytic activity. Our data show a dose-dependent inhibition of Lsd1 activity by Oct4 and retention of H3K4me1 at PpGe in Oct4 overexpressing P19 ECCs. These data suggest that Lsd1-Oct4 interaction in cancer stem cells could establish a primed enhancer state that is susceptible to reactivation leading to aberrant PpG expression.
- organism: mouse
- assay: ChIP-seq
- assay: DNA methylation
- research focus: gene regulatory network inference
- research focus: differential expression
- research focus: cell type annotation
- approach: statistical model
- approach: experimental assay
- Citations
- 31
- FWCI
- 1.46
- Field percentile
- top 19%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- The catalytic-independent function of LSD1 modulates the epigenetic landscape of mouse embryonic stem cells
Sandhya Malla, Kanchan Kumari, … Francesca Aguiló·bioRxiv·Jun 29, 2023
- LSD1/KDM1A Maintains Genome-wide Homeostasis of Transcriptional Enhancers
Saurabh Agarwal, Katherine M. Bonefas, … Shigeki Iwase·Genome ResearchPeer-reviewed·Feb 1, 2021
- Embryonic stem cell factors DPPA2/4 facilitate a unique chromatin state in non-small cell lung cancer
Janith A. Seneviratne, Clare L Crisp, … Mélanie A. Eckersley-Maslin·bioRxiv·Apr 27, 2025
- Enhancer-associated H3K4 methylation safeguards in vitro germlinecompetence
Tore Bleckwehl, Giuliano Crispatzu, … Álvaro Rada-Iglesias·Nature CommunicationsPeer-reviewed·Oct 1, 2021
- Loss of MLL3/4 decouples enhancer H3K4 monomethylation, H3K27 acetylation, and gene activation during ESC differentiation
Ryan M. Boileau, Kevin X. Chen, Robert H. Blelloch·bioRxiv·Oct 24, 2022
- OCT4 activates a Suv39h1-repressive antisense lncRNA to couple histone H3 Lysine 9 methylation to pluripotency
Laure D. Bernard, Agnès Dubois, … Pablo Navarro·Nucleic Acids ResearchPeer-reviewed·Jun 28, 2022