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- experimental assay 49,492
- cell type annotation 24,744
- statistical model 18,038
- differential expression 17,045
- host-pathogen & immune response 11,777
- bulk RNA-seq 11,555
- human 11,165
- proteomics 9,811
- gene regulatory network inference 8,764
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- drug response / drug discovery 5,600
1,000+ papers
- Cancer BiologybioRxivPreprint
BNCT Triggers Immunogenic Cell Death in B16 Melanoma Without Accompanying T-Cell Infiltration--Implications for Combination Immunotherapy
Rui Quan, Hefa Huang, Lili Zhang…·Long Gu
This study shows BNCT reduces B16 melanoma growth and survival, induces immunogenic cell death and a Th1 response, but fails to increase CD8+ T-cell infiltration, suggesting immune resistance mechanisms may limit its efficacy.
DOI 10.64898/2026.11.04.764456 - Cancer BiologybioRxivPreprint
Targeting NF-κB prevents Schwann cell reprogramming and plexiform neurofibroma initiation in mouse model of Nf1
DOI 10.64898/2026.11.04.764357 - Developmental BiologybioRxivPreprint
Compartment-Resolved Matrisome Shifts During Postnatal Tendon Maturation in Mice
Benjamin E Peterson, David Ceja Galindo, Maxwell C McCabe, Jenna L Galloway
This study uses compartment-resolved proteomics to analyze changes in the tendon matrisome during postnatal maturation in mice, revealing distinct trajectories in soluble and insoluble ECM components.
DOI 10.64898/2026.11.03.764030 - NeurosciencebioRxivPreprint
Simple, static, spiking nonlinearities can account for seemingly complex interactions between visual, motor and cognitive variables in the visual cortex.
Wojciech K Zajkowski, Katrina Quinn, Lenka Seillier…·Hendrikje Nienborg
The paper shows that simple nonlinearities in the visual cortex can explain complex interactions between visual, motor, and cognitive variables through additive input modulation.
DOI 10.64898/2026.11.01.763479 - ImmunologybioRxivPreprint
Clonally Convergent Tph/Tfh-like CD4+ T Cells are Shared Across Recovery and Recurrence in Experimental Periodontitis
Apoorva Sharma, Valentina Olmedo, Leticia Rojas…·Carla Alvarez Rivas
The paper identifies clonally convergent Tfh/Tph-like CD4+ T cells that persist in the mucosa after recovery from periodontitis and contribute to recurrence.
- Developmental BiologybioRxivPreprint
Ferroptosis of selective progenitor cell types during embryogenesis ensures proper organ morphogenesis
Montasir Elahi, Shicong Song, Wei-Bin Shen…·Peixin Yang
This study identifies ferroptosis in embryonic lung and kidney progenitor cells, showing its role in organ morphogenesis through genetic manipulation of Gpx4.
- MicrobiologybioRxivPreprint
Pneumocystis phosphoglucomutase links glucose-phosphate metabolism to β-1,3-glucan synthesis and cell-wall integrity
Theodore Kottom, Jenna L McLean, Andrew H Limper
This study shows that Pgm2 in Pneumocystis links glucose-phosphate metabolism to β-1,3-glucan synthesis and cell-wall integrity, making it a potential antifungal target.
- Cancer BiologybioRxivPreprint
BCL10 Gain-of-Function Impairs Germinal Center Participation by Naive B Cells and Cooperates with BCL6 to Drive Extrafollicular Diffuse Large B-Cell Lymphoma
Dhanvantri Chahar, Abdessamad Alaoui Youssfi, Caroline Alice Coughlin…·Jonathan H Schatz
This study shows BCL10 gain-of-function mutations prevent naive B cells from entering germinal centers and cooperate with BCL6 to cause extrafollicular diffuse large B-cell lymphoma.
- MicrobiologybioRxivPreprint
Wild wood mouse gut microbiota are influenced by captivity and cross-fostering
Rowan E Bancroft, Sarah E Wolf, Jessica L Hall…·Amy B Pedersen
This study examines how captivity and cross-fostering affect gut microbiota in wood mice, finding that microbial diversity and functional potential shift with host history and environment.
DOI 10.64898/2026.11.04.764189 - NeurosciencebioRxivPreprint
Sex differences in cell type-specific transcriptional programs and GPCR signaling in the human subgenual anterior cingulate cortex
Ariel W. Snowden, Niki Y. Li, Etienne Sibille…·Marianne L. Seney
The paper identifies sex-specific transcriptional differences in specific cell types of the human subgenual anterior cingulate cortex and links them to GPCR signaling differences in mice.
- NeurosciencebioRxivPreprint
Increased activity without changes in coupling between somata and apical dendrites during visual mismatches
Timothy M. Henley, Joshua Tindall, Jason E. Pina…·Blake A. Richards
This study examines neural responses in mouse visual cortex to natural and artificial visual stimuli, finding increased activity in response to natural mismatches but no change in dendritic-somatic coupling.
- BioinformaticsbioRxivPreprint
MorphoProt: RNA-Conditioned Integration of Multiscale Histology for Spatial Protein Inference
Lingzhe Xu, Liu Zheng, Yangen Zhan…·Kai Zhang
MorphoProt predicts spatial protein abundance using RNA expression, multiscale histology, and tissue neighborhoods, outperforming baselines in human and mouse tissues.
- GeneticsbioRxivPreprint
Transportability of mouse gene knockout models to human complex phenotypes
Laurence J Howe, Sara Wells, Neil M Davies…·George Davey Smith
The paper assesses the transportability of mouse gene knockout models to human complex phenotypes using GPAT framework, finding evidence for 12 phenotypes but limited for others.
- NeurosciencebioRxivPreprint
ClearGel: a thermoresponsive hydrogel for chronic, near-millimeter two-photon imaging through the intact skull
Lina Liu, Yufeng Gao, Yuezhi He…·Wei Zheng
ClearGel enables chronic, near-millimeter two-photon imaging through the intact skull in live mice with high resolution and reversibility.
- NeurosciencebioRxivPreprint
A Kernel-Spectral Index for Single-Neuron Input-Output Complexity
Zixuan Huang, Wenjie Chen, Bo Lei, Guozhang Chen
The paper introduces the Spectral Complexity Index (SCI), a white-box measure of single-neuron computational complexity that outperforms existing methods in efficiency and interpretability.
- Molecular BiologybioRxivPreprint
An integrated workflow for dual-guide CRISPR-Cas9 targeting and amplicon-based genotyping of Pla2g6 in primary mouse bone marrow-derived macrophages
Anil Kumar Challa, Sasanka Ramanadham, Rithvikha Nair…·Sriharsha Chowdarapu
This paper describes a workflow for dual-guide CRISPR-Cas9 editing of Pla2g6 in mouse BMDMs, showing high editing efficiency and specific deletion patterns.
DOI 10.64898/2026.11.03.763930 - PhysiologybioRxivPreprint
Site-, strain- and mutation-specific osteopetrosis phenotypes in mice with Clcn7 variants
Anika Shimonty, Xenia G Dahl, Elissa Zboinski…·Julia F Charles
This study examines how Clcn7 mutations in mice affect bone phenotypes, showing increased trabecular bone mass with variations based on age, sex, genetic background, and mutation type.
DOI 10.64898/2026.10.31.763333 - Developmental BiologybioRxivPreprint
Physiological caffeine concentrations do not affect enteric neural crest cell migration in a mouse model
Olivier Romito, Justine Peres, Monica Dicu…·Nicolas R Chevalier
This study shows that physiological caffeine doses do not impair enteric neural crest cell migration in a mouse model, suggesting caffeine is not directly responsible for Hirschsprung disease risk.
DOI 10.64898/2026.11.03.763904 - Cancer BiologybioRxivPreprint
Optimization of a Subcutaneous Epithelioid Hemangioendothelioma Xenograft Model for Evaluation of Preclinical Therapeutics
Zilu Chen, Lucy Wang, Valentina Zuco…·Christine Allen
This study optimizes a subcutaneous xenograft model for EHE using patient-derived cells, showing that low cell densities produce reproducible tumors sensitive to mTOR inhibition.
DOI 10.64898/2026.11.03.764004 - MicrobiologybioRxivPreprint
Phage-Inducible Chromosomal Jumbo Islands (PICJIs) spreading antimicrobial resistance, host-adaptation factors and defense systems, a novel satellite family of nucleus-forming Chimalliviridae
Aurore Rossignol, Karine Praud, Mélodie Roxane Alexandre…·Benoît Doublet
The paper identifies PICJIs as large mobile genetic elements in E. coli and Salmonella that spread antimicrobial resistance and defense systems via a specific bacteriophage.
- NeurosciencebioRxivPreprint
The ontogeny of hippocampal spatial memory is supported by postnatal Cajal-Retzius cells
Ingvild L. Glaerum, Rejwan H. F. Salih, Sachuriga Sachuriga…·Giulia Quattrocolo
This study shows that postnatal Cajal-Retzius cells are crucial for stabilizing hippocampal spatial representations and adaptive behavior.
DOI 10.64898/2026.11.03.763868 - ImmunologybioRxivPreprint
IL-23 licenses the transition from preclinical autoimmunity to inflammatory arthritis through IL-17A-dependent mechanisms
Matthias Jarlborg, Alexandra Circiumaru, Celine Lamacchia…·Cem Gabay
This study shows IL-23 promotes the transition from preclinical autoimmunity to arthritis by enhancing IL-17A and IFN-gamma production, and identifies IL-23 pathway changes in at-risk individuals.
DOI 10.64898/2026.10.30.762860 - NeurosciencebioRxivPreprint
Chronic Sleep Disruption Activates the Transcriptional Unfolded Protein Response and Induces Compartment-Specific Proteomic Changes in Mice
Claudia Espinosa-Garcia, Dilpreet Kour, Upasna Srivastava…·Srikant Rangaraju
This study shows chronic sleep disruption causes distinct transcriptional and proteomic changes in brain compartments, particularly affecting synaptic function and potentially contributing to Alzheimer's risk.
DOI 10.64898/2026.11.03.763923 - BioinformaticsbioRxivPreprint
SQANTI-evidence: isoform-resolved, evidence-tiered structural annotation of unannotated genomes from long-read RNA-seq
Pablo Atienza Lopez, Ana Conesa
SQANTI-evidence annotates genomes from long-read RNA-seq without a reference, achieving high precision in gene and isoform prediction across species.
- Developmental BiologybioRxivPreprint
Neural Crest-Derived Endocardial Cells Required for Heart Valve Development
Alexander F. Merriman, Mauro W. Costa, Angelo Pelonero…·Deepak Srivastava
The paper identifies a rare population of neural crest-derived endocardial cells essential for heart valve development in mice and humans, showing their role in valve morphogenesis through Pthlh signaling.
- Developmental BiologybioRxivPreprint
Oocyte-stored Mif promotes preimplantation development as an embryonic extracellular signal
John Xiao He Li, Huasong Wang, Lifang Li…·Anming Meng
This study identifies Mif as an oocyte-stored protein that promotes preimplantation embryo development through extracellular signaling, showing its role in blastocyst growth and density-dependent effects.
DOI 10.64898/2026.11.03.763862 - Cell BiologyEMBO ReportsPeer-reviewed
CD90 identifies distinct fractions of muscle stem cells with different modalities of activation and quiescence maintenance
Eyemen Kheir, Michela Libergoli, Serena Di Savino…·Stefano Biressi
The paper identifies CD90 as a marker distinguishing two muscle stem cell subpopulations with different activation kinetics and quiescence maintenance mechanisms in mice and humans.
- NeurosciencebioRxivPreprint
Neural dynamics become significantly faster and more nonlinear at the peak of information processing
toktam samiei, Sidd Lokray, Hafiz Fareed Ahmed, Erfan Nozari
The paper shows that neural populations adjust their optimal temporal resolution during stimulus processing, becoming faster and more nonlinear when decoding information is most accurate.
DOI 10.64898/2026.11.01.763548