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The paper uses TrackerSci to analyze newborn cell dynamics across 21 mouse tissues at different ages, showing how aging affects cell renewal and composition.

The paper constructs a graph-based pangenome of Cucurbita pepo to study adaptive evolution, identifying structural variants and showing parallel domestication and environmental adaptation.

The paper introduces DGRP3, an expanded Drosophila genetic reference panel with 1,233 inbred lines, identifying genetic variants and performing GWAS for traits like inbreeding depression and sensory bristles.

The paper shows HRd is a continuum with functional and mutational heterogeneity, highlighting the need for refined molecular classification for precision interventions.

This study analyzes mitochondrial genomes of Paramecium to explore evolutionary dynamics, revealing cryptic diversity, conserved genes, and patterns of molecular evolution.

The paper presents a chromosome-level genome assembly for Parides eurimedes mylotes, enabling studies on wing coloration genetics and evolutionary biology.

OneGenome-Rice (OGR) is a genomic foundation model for rice pre-trained on 422 genomes, outperforming existing models in 11 tasks and enabling downstream applications like trait analysis and gene expression prediction.

This study uses quantitative metagenomics to track microbial population dynamics across estuarine and coastal waters, revealing niche partitioning and ecological interactions.

The paper analyzes the population structure of Neoparamoeba perurans and its kinetoplastid symbiont Perkinsela, revealing asymmetry in their genetic diversity and transmission patterns.

This paper presents an optimized AlphaFold2 implementation for CPUs, achieving significant speedups and higher throughput compared to GPU-based solutions.

The paper investigates genetic resilience in Xatartia scabra under isolation, finding moderate diversity and low inbreeding despite small population sizes and strong isolation.

The paper identifies 105 dual coding regions under purifying selection in both reading frames, with many linked to brain development and neural functions.

The paper identifies intra-genic mutational robustness through alternative splicing in cancer, showing it can complement inter-genic robustness and is associated with worse disease outcomes.

This paper generates the first draft genome of Greyia radlkoferi using PacBio long-read sequencing, providing insights into its environmental resilience and medicinal properties.

The paper investigates the evolutionary origins of shared structural variants across Atlantic salmon lineages, finding they result from ancient persistence, recurrent mutation, and lineage-specific frequency changes.

This study identifies shared and niche-specific transcriptional changes in macrophages across tissues and sexes using a meta-analysis of RNA-sequencing datasets.

This paper develops a miRNA-based gestational age clock (miRClock-GA) using cord blood plasma miRNA data and validates it in an independent cohort, showing associations with birthweight and childhood BMI.

This study identifies Atg8/LC3 as a stress-responsive chromatin cofactor that coordinates immune and metabolic transcription through interactions with NF-κB/Dif in Drosophila.

This study maps transcription initiation in mouse astrocytes to define how inflammatory signals drive cell-type-specific gene regulation and links enhancer activity to human disease risk.

This study analyzes gut microbiome and resistome diversity in Indigenous Orang Asli communities in Malaysia, finding that urbanization reduces microbial diversity but increases antibiotic resistance gene diversity.